About lab
Source-faithful physiology lab for Goldbeter, Gonze and Pourquie 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagegoldbeter2007-sharp-developmental-thresholds-defined-through-bis
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_concentration_c",
"label": "Initial C Concentration C",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.initial_c_concentration_c",
"description": "Initial value for C Concentration C. Maps to source symbol `C`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"nanomolar"
]
},
{
"name": "initial_concentration_f",
"label": "Initial Concentration F (source F)",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.initial_concentration_f",
"description": "Initial value for Concentration F (source F). Maps to source symbol `F`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state.",
"accepted_units": [
"nanomolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.variable_labels"
},
{
"name": "concentration_f",
"label": "Concentration F (source F)",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.concentration_f",
"description": "Concentration F (source F). Maps to source symbol `F`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "concentration_m_c",
"label": "Concentration M C (source M_C)",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.concentration_m_c",
"description": "Concentration M C (source M_C). Maps to source symbol `M_C`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "concentration_ra",
"label": "Concentration Ra (source RA)",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.concentration_ra",
"description": "Concentration Ra (source RA). Maps to source symbol `RA`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "c_concentration",
"label": "C Concentration",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.c_concentration",
"description": "C Concentration. Maps to source symbol `C`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_1",
"label": "Alpha 1",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.alpha_1",
"description": "Alpha 1. Maps to source symbol `alpha_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_2",
"label": "Alpha 2",
"maps_to": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.alpha_2",
"description": "Alpha 2. Maps to source symbol `alpha_2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Goldbeter2007 - Sharp Developmental Thresholds Defined Through Bistability Lab",
"models": [
{
"path": "owned/models/physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model",
"alias": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model",
"parameters": {
"model_path": "data/goldbeter_2007.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model_state"
],
"from": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model_summary"
],
"from": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model_trajectory"
],
"from": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model_variable_labels"
],
"from": "physiology_cellml_goldbeter_gonze_and_pourquie_2007_goldbetergonzepourquie2007_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Goldbeter, Gonze and Pourquie 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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