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You2010 Yeast Translation Lab

About lab

yeast mRNA translation. This the model from the article: A quantitative model for mRNA translation in Saccharomyces cerevisiae. It can be used to explore generegulation you2010 general yeast mrna translation dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageyou2010-yeast-translation-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "eif2_gdp",
        "maps_to": "you2010_yeast_translation.eif2_gdp"
      },
      {
        "name": "eif2b",
        "maps_to": "you2010_yeast_translation.eif2b"
      },
      {
        "name": "initiation_complex_43s",
        "maps_to": "you2010_yeast_translation.initiation_complex_43s"
      },
      {
        "name": "ribosome_mrna_complex",
        "maps_to": "you2010_yeast_translation.ribosome_mrna_complex"
      },
      {
        "name": "state",
        "maps_to": "you2010_yeast_translation.state"
      },
      {
        "name": "summary",
        "maps_to": "you2010_yeast_translation.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "you2010_yeast_translation.species_labels"
      }
    ]
  },
  "title": "You2010 Yeast Translation Lab",
  "models": [
    {
      "path": "owned/models/you2010_yeast_translation",
      "alias": "you2010_yeast_translation",
      "parameters": {
        "model_path": "data/MODEL8459127548.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/you2010_yeast_translation"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.you2010_yeast_translation_eif2_gdp"
      ],
      "from": "you2010_yeast_translation.eif2_gdp"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_eif2b"
      ],
      "from": "you2010_yeast_translation.eif2b"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_initiation_complex_43s"
      ],
      "from": "you2010_yeast_translation.initiation_complex_43s"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_ribosome_mrna_complex"
      ],
      "from": "you2010_yeast_translation.ribosome_mrna_complex"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_state"
      ],
      "from": "you2010_yeast_translation.state"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_summary"
      ],
      "from": "you2010_yeast_translation.summary"
    },
    {
      "to": [
        "visualisation.you2010_yeast_translation_species_labels"
      ],
      "from": "you2010_yeast_translation.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "yeast mRNA translation. This the model from the article: A quantitative model for mRNA translation in Saccharomyces cerevisiae. It can be used to explore generegulation you2010 general yeast mrna translation dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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