About lab
Mitchell2013 - Liver Iron Metabolism The model includes the core regulatory components of human liver iron metabolism. This model is described in the article: A computational model of liver iron metab.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagemitchell2013-liver-iron-metabolism-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_iron_metabolism_state_1",
"units": "native SBML value",
"default": "5e-9",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.initial_iron_metabolism_state_1",
"description": "Initial condition for iron metabolism state 1. Maps to bundled SBML symbol `species_7`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_2",
"units": "native SBML value",
"default": 0,
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.initial_iron_metabolism_state_2",
"description": "Initial condition for iron metabolism state 2. Maps to bundled SBML symbol `species_24`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_ferritin",
"units": "native SBML value",
"default": 1.66e-10,
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.initial_ferritin",
"description": "Initial condition for ferritin. Maps to bundled SBML symbol `species_25`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_ft1",
"units": "native SBML value",
"default": 0,
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.initial_ft1",
"description": "Initial condition for ft1. Maps to bundled SBML symbol `species_26`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_iron_metabolism_state_5",
"units": "native SBML value",
"default": 3.56e-11,
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.initial_iron_metabolism_state_5",
"description": "Initial condition for iron metabolism state 5. Maps to bundled SBML symbol `species_1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "iron_metabolism_state_1",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.iron_metabolism_state_1"
},
{
"name": "iron_metabolism_state_2",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.iron_metabolism_state_2"
},
{
"name": "ferritin",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.ferritin"
},
{
"name": "ft1",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.ft1"
},
{
"name": "iron_metabolism_state_5",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.iron_metabolism_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.observable_labels"
}
]
},
"title": "Mitchell2013 - Liver Iron Metabolism Lab",
"models": [
{
"path": "owned/models/metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model",
"alias": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model",
"parameters": {
"model_path": "data/BIOMD0000000498.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model_observable_values"
],
"from": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model_run_summary"
],
"from": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model_observable_labels"
],
"from": "metabolism_sbml_mitchell2013_liver_iron_metabolism_biomd0000000498_model.observable_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Mitchell2013 - Liver Iron Metabolism The model includes the core regulatory components of human liver iron metabolism. This model is described in the article: A computational model of liver iron metab.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.