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Elowitz2000 Repressilator Lab

About lab

Elowitz2000 - Repressilator This model describes the deterministic version of the repressilator system. The authors of this model (see reference) use three transcriptional repressor systems that are n.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageelowitz2000-repressilator-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_i_protein",
        "label": "Initial C I Protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_c_i_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PZ`."
      },
      {
        "name": "initial_tet_r_protein",
        "label": "Initial Tet R Protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_tet_r_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PY`."
      },
      {
        "name": "initial_lac_i_protein",
        "label": "Initial Lac I Protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_lac_i_protein",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PX`."
      },
      {
        "name": "initial_tet_r_mrna",
        "label": "Initial Tet R MRNA",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_tet_r_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
      },
      {
        "name": "initial_c_i_mrna",
        "label": "Initial C I MRNA",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_c_i_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Z`."
      },
      {
        "name": "initial_lac_i_mrna",
        "label": "Initial Lac I MRNA",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_lac_i_mrna",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.species_labels"
      },
      {
        "name": "c_i_protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.c_i_protein"
      },
      {
        "name": "tet_r_protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.tet_r_protein"
      },
      {
        "name": "lac_i_protein",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.lac_i_protein"
      },
      {
        "name": "tet_r_mrna",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.tet_r_mrna"
      },
      {
        "name": "c_i_mrna",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.c_i_mrna"
      },
      {
        "name": "lac_i_mrna",
        "maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.lac_i_mrna"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Elowitz2000 Repressilator Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model",
      "alias": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_state"
      ],
      "from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_summary"
      ],
      "from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_species_labels"
      ],
      "from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Elowitz2000 - Repressilator This model describes the deterministic version of the repressilator system. The authors of this model (see reference) use three transcriptional repressor systems that are n.",
  "schema_version": "2.0"
}

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