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Xu2002 Blood Coagulation Model Of Activated Factors With Platelet Lab

About lab

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet

This Biosimulant lab wraps Xu2002 Blood Coagulation Model Of Activated Factors With Platelet as a runnable systems biology model with a companion visualization module. System of ODEs to describe the dynamics of several activated factors of blood coagulation. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: Xu2002 - Blood Coagulation Model of Activated Factors with Platelet Activation. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on x5, x4, x2, x6, x3, and x1, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, x4 moved from 1.000 to 18.597 across 1.0 simulation windows.

Output Visualizations

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet - run interpretation

Summary table for Xu2002 Blood Coagulation Model Of Activated Factors With Platelet, reporting the scientific question, observed answer, dominant module, and caveat.

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet - timeseries visualization

Trajectories of x4, x5, x2, x6, x3, and x1 across the 1.0 simulation. In this run x4 climbed from 1.000 to 18.597 — the largest movements among the focused observables.

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: x4 = 20.281, x5 = 5.542, x2 = 2.049, with 3 more observables below.

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 3 by value: x4 = 18.597, x5 = 5.784, x2 = 2.695, with 3 more observables below.

Xu2002 Blood Coagulation Model Of Activated Factors With Platelet - visualization

Visualization card from the Xu2002 Blood Coagulation Model Of Activated Factors With Platelet dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:MODEL1806130001
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Model State X5systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x5Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x5.
Initial Model State X4systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x4Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x4.
Initial Model State X2systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x2.
Initial Model State X6systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x6Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x6.
Initial Model State X3systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x3Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x3.
Initial Model State X1systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol x1.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.species_labelsAvailable to the visualization model and downstream workflows.
model_state_x5systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x5Available to the visualization model and downstream workflows.
model_state_x4systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x4Available to the visualization model and downstream workflows.
model_state_x2systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x2Available to the visualization model and downstream workflows.
model_state_x6systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x6Available to the visualization model and downstream workflows.
model_state_x3systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x3Available to the visualization model and downstream workflows.
model_state_x1systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x1Available to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

System of ODEs to describe the dynamics of several activated factors of blood coagulation. Publication introduces a platelet activation term for synthesis of Xa and IIa.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagexu2002-blood-coagulation-model-of-activated-factors-with-platele
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_x5",
        "label": "Initial Model State X5",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x5",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x5`."
      },
      {
        "name": "initial_model_state_x4",
        "label": "Initial Model State X4",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x4",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x4`."
      },
      {
        "name": "initial_model_state_x2",
        "label": "Initial Model State X2",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2`."
      },
      {
        "name": "initial_model_state_x6",
        "label": "Initial Model State X6",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x6",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x6`."
      },
      {
        "name": "initial_model_state_x3",
        "label": "Initial Model State X3",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x3`."
      },
      {
        "name": "initial_model_state_x1",
        "label": "Initial Model State X1",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.initial_model_state_x1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.species_labels"
      },
      {
        "name": "model_state_x5",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x5"
      },
      {
        "name": "model_state_x4",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x4"
      },
      {
        "name": "model_state_x2",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x2"
      },
      {
        "name": "model_state_x6",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x6"
      },
      {
        "name": "model_state_x3",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x3"
      },
      {
        "name": "model_state_x1",
        "maps_to": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.model_state_x1"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Xu2002 Blood Coagulation Model Of Activated Factors With Platelet Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model",
      "alias": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model_state"
      ],
      "from": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model_summary"
      ],
      "from": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model_species_labels"
      ],
      "from": "systemsbiology_sbml_xu2002_blood_coagulation_model_of_activated_fact_model1806130001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "System of ODEs to describe the dynamics of several activated factors of blood coagulation. Publication introduces a platelet activation term for synthesis of Xa and IIa.",
  "schema_version": "2.0"
}

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