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Margaridamartins2001 - Situ Kinetic Analysis Glyoxalase I Glyoxalase Ii Lab

About lab

Source-faithful physiology lab for Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagemargaridamartins2001-situ-kinetic-analysis-glyoxalase-i-glyoxala
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_reduced_gluthathione",
        "label": "Initial Reduced Gluthathione",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.initial_reduced_gluthathione",
        "description": "Initial value for Reduced Gluthathione. Maps to source symbol `GSH`. Units: millimolar. Naming evidence: source metadata names `GSH` as `reduced gluthathione`.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_s_d_lactoylglutathione",
        "label": "Initial S D Lactoylglutathione",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.initial_s_d_lactoylglutathione",
        "description": "Initial value for S D Lactoylglutathione. Maps to source symbol `SDLGSH`. Units: millimolar. Naming evidence: source metadata names `SDLGSH` as `S-D-lactoylglutathione`.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.variable_labels"
      },
      {
        "name": "reduced_gluthathione",
        "label": "Reduced Gluthathione",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.reduced_gluthathione",
        "description": "Reduced Gluthathione. Maps to source symbol `GSH`. Units: millimolar. Naming evidence: source metadata names `GSH` as `reduced gluthathione`."
      },
      {
        "name": "s_d_lactoylglutathione",
        "label": "S D Lactoylglutathione",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.s_d_lactoylglutathione",
        "description": "S D Lactoylglutathione. Maps to source symbol `SDLGSH`. Units: millimolar. Naming evidence: source metadata names `SDLGSH` as `S-D-lactoylglutathione`."
      },
      {
        "name": "hemithioacetal",
        "label": "Hemithioacetal",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.hemithioacetal",
        "description": "Hemithioacetal. Maps to source symbol `HTA`. Units: millimolar. Naming evidence: source metadata names `HTA` as `hemithioacetal`."
      },
      {
        "name": "keq",
        "label": "Keq",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.keq",
        "description": "Keq. Maps to source symbol `Keq`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kmp",
        "label": "Kmp",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.kmp",
        "description": "Kmp. Maps to source symbol `Kmp`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "kmq",
        "label": "Kmq",
        "maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.kmq",
        "description": "Kmq. Maps to source symbol `Kmq`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Margaridamartins2001 - Situ Kinetic Analysis Glyoxalase I Glyoxalase Ii Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model",
      "alias": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model",
      "parameters": {
        "model_path": "data/martins_mendes_coreiro_freire_2001.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_state"
      ],
      "from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_summary"
      ],
      "from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_trajectory"
      ],
      "from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_variable_labels"
      ],
      "from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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