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Komarova2003 Boneremodeling Lab

About lab

This a model from the article: Mathematical model predicts a critical role for osteoclast autocrine regulation in the control of bone remodeling. Komarova SV, Smith RJ, Dixon SJ, Sims SM, Wahl LM Bone.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekomarova2003-boneremodeling-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_steady_state_osteoclast",
        "label": "Initial Steady State Osteoclast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_steady_state_osteoclast",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1_bar`."
      },
      {
        "name": "initial_steady_state_osteoblast",
        "label": "Initial Steady State Osteoblast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_steady_state_osteoblast",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2_bar`."
      },
      {
        "name": "initial_osteoblast",
        "label": "Initial Osteoblast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_osteoblast",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2`."
      },
      {
        "name": "initial_osteoclast",
        "label": "Initial Osteoclast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_osteoclast",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1`."
      },
      {
        "name": "initial_cells_actively_resorbing_bone",
        "label": "Initial Cells Actively Resorbing Bone",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_cells_actively_resorbing_bone",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y1`."
      },
      {
        "name": "initial_cells_actively_forming_bone",
        "label": "Initial Cells Actively Forming Bone",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_cells_actively_forming_bone",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.species_labels"
      },
      {
        "name": "steady_state_osteoclast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.steady_state_osteoclast"
      },
      {
        "name": "steady_state_osteoblast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.steady_state_osteoblast"
      },
      {
        "name": "osteoblast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.osteoblast"
      },
      {
        "name": "osteoclast",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.osteoclast"
      },
      {
        "name": "cells_actively_resorbing_bone",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.cells_actively_resorbing_bone"
      },
      {
        "name": "cells_actively_forming_bone",
        "maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.cells_actively_forming_bone"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Komarova2003 Boneremodeling Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model",
      "alias": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_state"
      ],
      "from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_summary"
      ],
      "from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_species_labels"
      ],
      "from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Mathematical model predicts a critical role for osteoclast autocrine regulation in the control of bone remodeling. Komarova SV, Smith RJ, Dixon SJ, Sims SM, Wahl LM Bone.",
  "schema_version": "2.0"
}

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