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Bertram2004 - Calcium Glycolysis Mediate Multiple Bursting Modes Lab

About lab

Source-faithful physiology lab for Bertram, Satin, Zhang, Smolen, Sherman, 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebertram2004-calcium-glycolysis-mediate-multiple-bursting-modes-l
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_membrane_n",
        "label": "Initial Membrane N",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.initial_membrane_n",
        "description": "Initial value for Membrane N. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.variable_labels"
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `IKCa`. Units: femtoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current_ica",
        "label": "Calcium Current Ica",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_current_ica",
        "description": "Calcium Current Ica. Maps to source symbol `ICa`. Units: femtoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance",
        "label": "Calcium Conductance",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_conductance",
        "description": "Calcium Conductance. Maps to source symbol `gKCa`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_conductance_g_ca",
        "label": "Calcium Conductance G Ca",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_conductance_g_ca",
        "description": "Calcium Conductance G Ca. Maps to source symbol `gCa`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_conductance",
        "label": "Potassium Conductance",
        "maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.potassium_conductance",
        "description": "Potassium Conductance. Maps to source symbol `gK`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Bertram2004 - Calcium Glycolysis Mediate Multiple Bursting Modes Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model",
      "alias": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model",
      "parameters": {
        "model_path": "data/bertram_satin_zhang_smolen_sherman_2004_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_state"
      ],
      "from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_summary"
      ],
      "from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_trajectory"
      ],
      "from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_variable_labels"
      ],
      "from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bertram, Satin, Zhang, Smolen, Sherman, 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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