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Band2012 Dii Venus Fullmodel Lab

About lab

This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton AM, French.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageband2012-dii-venus-fullmodel-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_venus",
        "label": "Initial Venus",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.initial_venus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `VENUS`."
      },
      {
        "name": "initial_tir1",
        "label": "Initial Tir1",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.initial_tir1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TIR1`."
      },
      {
        "name": "initial_auxin",
        "label": "Initial Auxin",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.initial_auxin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `auxin`."
      },
      {
        "name": "initial_auxin_tir1_venus",
        "label": "Initial Auxin Tir1 Venus",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.initial_auxin_tir1_venus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `auxinTIR1VENUS`."
      },
      {
        "name": "initial_auxin_tir1",
        "label": "Initial Auxin Tir1",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.initial_auxin_tir1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `auxinTIR1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.species_labels"
      },
      {
        "name": "venus",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.venus"
      },
      {
        "name": "tir1",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.tir1"
      },
      {
        "name": "auxin",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.auxin"
      },
      {
        "name": "auxin_tir1_venus",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.auxin_tir1_venus"
      },
      {
        "name": "auxin_tir1",
        "maps_to": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.auxin_tir1"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Band2012 Dii Venus Fullmodel Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model",
      "alias": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model_state"
      ],
      "from": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model_summary"
      ],
      "from": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model_species_labels"
      ],
      "from": "systemsbiology_sbml_band2012_dii_venus_fullmodel_biomd0000000413_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton AM, French.",
  "schema_version": "2.0"
}

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