About lab
Phillips2007 - Quantitative Sleep Wake Dynamics Based Brainst Phillips2007 Lab
Scientific Source
- Source type:
PhysioMe CellML - Upstream ID:
physiome:phillips_2007 - Original URL: https://models.physiomeproject.org/workspace/phillips_2007
- Bundled artifact:
data/phillips_2007.cellml
The bundled CellML/SBML artifact remains the scientific source of truth. This cleanup does not rewrite equations, parameters, units, or initial values; it exposes selected source symbols with conservative user-facing names.
Public Interface
Source-backed inputs:
initial_model_state_vm(Model State Vm (source Vm)) maps to source symbolVm; units:mV; evidence: source symbol is too ambiguous for a stronger public label.initial_model_state_vv(Model State Vv (source Vv)) maps to source symbolVv; units:mV; evidence: source symbol is too ambiguous for a stronger public label.- The simulator still uses an internal
integration_stepparameter from the model manifest; it is not exposed as a biological lab input.
Selected outputs:
state,summary,trajectory, andvariable_labelsremain available for traceability.model_state_vm(Model State Vm (source Vm)) maps to source symbolVm; units:mV; evidence: source symbol is too ambiguous for a stronger public label.model_state_vv(Model State Vv (source Vv)) maps to source symbolVv; units:mV; evidence: source symbol is too ambiguous for a stronger public label.somnogen_level(Somnogen Level) maps to source symbolH; units:nM; evidence: source metadata namesHassomnogen level.chi(Chi) maps to source symbolchi; units:hour; evidence: source symbol, component, or units provide a direct public name.model_parameter_c(Model Parameter C (source C)) maps to source symbolC; units:dimensionless; evidence: source symbol is dimensionless but lacks enough evidence for a biological label.model_parameter_c0(Model Parameter C0 (source c0)) maps to source symbolc0; units:dimensionless; evidence: source symbol is dimensionless but lacks enough evidence for a biological label.
Ambiguous source symbols are intentionally given conservative names such as model_state_*, cell_population_*, or rate_constant_* rather than unsupported biological interpretations.
Visualisations
Visual scope: Selected source-variable trajectories; final observable ranking; source/runtime evidence table; scientific Q/A.
The visualisation renders a scientific Q/A table, selected source-variable trajectories, final observable values, and source/runtime evidence. The cards use runtime outputs from the core wrapper and suppress empty data.
Output Visualizations




Caveat
This validates source-faithful execution and Biosimulant wiring for source-model physiology; it does not claim clinical safety or full reproduction of every upstream figure.
Source-faithful physiology lab for Phillips 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Runs
Metadata
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_vm",
"label": "Initial Model State Vm (source Vm)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.initial_model_state_vm",
"description": "Initial value for Model State Vm (source Vm). Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_model_state_vv",
"label": "Initial Model State Vv (source Vv)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.initial_model_state_vv",
"description": "Initial value for Model State Vv (source Vv). Maps to source symbol `Vv`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mV"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.variable_labels"
},
{
"name": "model_state_vm",
"label": "Model State Vm (source Vm)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.model_state_vm",
"description": "Model State Vm (source Vm). Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_vv",
"label": "Model State Vv (source Vv)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.model_state_vv",
"description": "Model State Vv (source Vv). Maps to source symbol `Vv`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "somnogen_level",
"label": "Somnogen Level",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.somnogen_level",
"description": "Somnogen Level. Maps to source symbol `H`. Units: nM. Naming evidence: source metadata names `H` as `somnogen level`."
},
{
"name": "chi",
"label": "Chi",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.chi",
"description": "Chi. Maps to source symbol `chi`. Units: hour. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameter_c",
"label": "Model Parameter C (source C)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.model_parameter_c",
"description": "Model Parameter C (source C). Maps to source symbol `C`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_parameter_c0",
"label": "Model Parameter C0 (source c0)",
"maps_to": "physiology_cellml_phillips_2007_phillips2007_model.model_parameter_c0",
"description": "Model Parameter C0 (source c0). Maps to source symbol `c0`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Phillips2007 - Quantitative Sleep Wake Dynamics Based Brainst Phillips2007 Lab",
"models": [
{
"path": "owned/models/physiology_cellml_phillips_2007_phillips2007_model",
"alias": "physiology_cellml_phillips_2007_phillips2007_model",
"parameters": {
"model_path": "data/phillips_2007.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_phillips_2007_phillips2007_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_phillips_2007_phillips2007_model_state"
],
"from": "physiology_cellml_phillips_2007_phillips2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2007_phillips2007_model_summary"
],
"from": "physiology_cellml_phillips_2007_phillips2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2007_phillips2007_model_trajectory"
],
"from": "physiology_cellml_phillips_2007_phillips2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_phillips_2007_phillips2007_model_variable_labels"
],
"from": "physiology_cellml_phillips_2007_phillips2007_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Phillips 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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