About lab
Siddhartha Jain. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagesiddhartha2002-kinetic-modelling-of-cancer-therapies-lab
Created2026-05-16
Updated2026-05-16
biomodels_ebicurateddrug-responsefaithfuloncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ttum",
"label": "Ttum",
"units": "native SBML value",
"default": 1000000,
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.initial_ttum",
"description": "Initial Ttum. Sets the initial value of bundled SBML symbol `Ttum`."
},
{
"name": "initial_tplas",
"label": "Tplas",
"units": "native SBML value",
"default": 4000000,
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.initial_tplas",
"description": "Initial Tplas. Sets the initial value of bundled SBML symbol `Tplas`."
},
{
"name": "initial_tnew",
"label": "Tnew",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.initial_tnew",
"description": "Initial Tnew. Sets the initial value of bundled SBML symbol `Tnew`."
}
],
"outputs": [
{
"name": "ttum",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.ttum",
"description": "Ttum observable. Maps to SBML symbol `Ttum`."
},
{
"name": "tplas",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.tplas",
"description": "Tplas observable. Maps to SBML symbol `Tplas`."
},
{
"name": "tnew",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.tnew",
"description": "Tnew observable. Maps to SBML symbol `Tnew`."
},
{
"name": "state",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"drug-response",
"faithful",
"oncology",
"pharmacology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Siddhartha2002 - Kinetic modelling of cancer therapies Lab",
"models": [
{
"path": "owned/models/oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model",
"alias": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model",
"provenance": {
"owned_path": "owned/models/oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model_state"
],
"from": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.state"
},
{
"to": [
"visualisation.oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model_summary"
],
"from": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model_species_labels"
],
"from": "oncology_sbml_siddhartha2002_kinetic_modelling_of_cancer_thera_biomd0000001048_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Siddhartha Jain. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
"schema_version": "2.0"
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