About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesarma2012-oscillations-in-mapk-cascade-s2n-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mapk_kinase_kinase",
"label": "Initial MAPK kinase kinase",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.initial_mapk_kinase_kinase",
"description": "Initial level of MAPK kinase kinase. Maps to SBML symbol `species_0`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "mapk_kinase_kinase",
"label": "MAPK kinase kinase",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.mapk_kinase_kinase",
"description": "MAPK kinase kinase. Maps to SBML symbol `species_0` and is emitted in native SBML units."
},
{
"name": "mapk_kinase_kinase_p",
"label": "MAPK kinase kinase P",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.mapk_kinase_kinase_p",
"description": "MAPK kinase kinase P. Maps to SBML symbol `species_1` and is emitted in native SBML units."
},
{
"name": "mapk_kinase",
"label": "MAPK kinase",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.mapk_kinase",
"description": "MAPK kinase. Maps to SBML symbol `species_2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Sarma2012 - Oscillations in MAPK cascade (S2n) Lab",
"models": [
{
"path": "owned/models/signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model",
"alias": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model_state"
],
"from": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model_summary"
],
"from": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model_species_labels"
],
"from": "signaling_sbml_sarma2012_oscillations_in_mapk_cascade_s2n_biomd0000000444_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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