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Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus Lab

About lab

A. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagehernandez-vargas2012-innate-immune-system-dynamics-to-influenza
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_partially_infected_epithelial_cells_u_e",
        "label": "Initial Partially Infected Epithelial Cells U E",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.initial_partially_infected_epithelial_cells_u_e",
        "description": "Initial Partially Infected Epithelial Cells U E. Sets the initial value of bundled SBML species `U_E`."
      },
      {
        "name": "initial_infected_epithelial_cells_u_i",
        "label": "Initial Infected Epithelial Cells U I",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.initial_infected_epithelial_cells_u_i",
        "description": "Initial Infected Epithelial Cells U I. Sets the initial value of bundled SBML species `U_I`."
      },
      {
        "name": "initial_viral_load_v",
        "label": "Initial Viral Load V",
        "units": "native source value",
        "default": 0.001,
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.initial_viral_load_v",
        "description": "Initial Viral Load V. Sets the initial value of bundled SBML species `V`."
      },
      {
        "name": "initial_interferon_interferon",
        "label": "Initial Interferon Interferon",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.initial_interferon_interferon",
        "description": "Initial Interferon Interferon. Sets the initial value of bundled SBML species `IFN`."
      },
      {
        "name": "initial_healthy_epithelial_cells_u_h",
        "label": "Initial Healthy Epithelial Cells U H",
        "units": "native source value",
        "default": 500000000,
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.initial_healthy_epithelial_cells_u_h",
        "description": "Initial Healthy Epithelial Cells U H. Sets the initial value of bundled SBML species `U_H`."
      }
    ],
    "outputs": [
      {
        "name": "partially_infected_epithelial_cells_u_e",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.partially_infected_epithelial_cells_u_e"
      },
      {
        "name": "infected_epithelial_cells_u_i",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.infected_epithelial_cells_u_i"
      },
      {
        "name": "viral_load_v",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.viral_load_v"
      },
      {
        "name": "interferon_interferon",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.interferon_interferon"
      },
      {
        "name": "healthy_epithelial_cells_u_h",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.healthy_epithelial_cells_u_h"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.species_labels"
      }
    ]
  },
  "title": "Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model",
      "alias": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model_state"
      ],
      "from": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model_summary"
      ],
      "from": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model_species_labels"
      ],
      "from": "immunology_sbml_hernandez_vargas2012_innate_immune_system_dynami_biomd0000000710_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "A. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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