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Tong2011 Full - Ionic Currents Action Potential Lab

About lab

Source-faithful physiology lab for Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagetong2011-full-ionic-currents-action-potential-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mV"
        ]
      },
      {
        "name": "initial_ca_dependent_force_w",
        "label": "Initial Ca Dependent Force W",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.initial_ca_dependent_force_w",
        "description": "Initial value for Ca Dependent Force W. Maps to source symbol `w`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.variable_labels"
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `I_Ca_tot`. Units: pA_per_pF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `v`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_capacitance",
        "label": "Membrane Capacitance",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.membrane_capacitance",
        "description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: uF_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `nai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_tot",
        "label": "I Tot",
        "maps_to": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.i_tot",
        "description": "I Tot. Maps to source symbol `I_tot`. Units: pA_per_pF. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Tong2011 Full - Ionic Currents Action Potential Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model",
      "alias": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model",
      "parameters": {
        "model_path": "data/Tong_Choi_Kharche_Holden_Zhang_Taggart_2011.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model_state"
      ],
      "from": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model_summary"
      ],
      "from": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model_trajectory"
      ],
      "from": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model_variable_labels"
      ],
      "from": "physiology_cellml_tong_choi_kharche_holden_zhang_taggart_2011_261_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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