About lab
Clean Biosimulant lab for systems signaling model: Zymomonas ED Pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagezymomonas-ed-pathway
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_co2ex",
"label": "Initial Co2ex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.initial_co2ex",
"description": "Initial level of Co2ex. Maps to SBML symbol `CO2ex`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glucex",
"label": "Initial Glucex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.initial_glucex",
"description": "Initial level of Glucex. Maps to SBML symbol `GLUCex`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ethanolex",
"label": "Ethanolex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.ethanolex",
"description": "Ethanolex. Maps to SBML symbol `ETHANOLex` and is emitted in native SBML units."
},
{
"name": "glucex",
"label": "Glucex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.glucex",
"description": "Glucex. Maps to SBML symbol `GLUCex` and is emitted in native SBML units."
},
{
"name": "pyrex",
"label": "Pyrex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.pyrex",
"description": "Pyrex. Maps to SBML symbol `PYRex` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Zymomonas ED Pathway Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_state"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_summary"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_species_labels"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.species_labels"
}
],
"package": "zymomonas-ed-pathway",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Zymomonas ED Pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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