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Kowald2006 Sod Lab

About lab

This model is according to the paper from Axel Kowald Alternative pathways as mechanism for the negative effects associated with overexpression of superoxide dismutase. It can be used to explore systemsbiology kowald2006 sod BioModels0000000108 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekowald2006-sod-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_so_dtotal",
        "label": "Initial So Dtotal",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_so_dtotal",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000016`."
      },
      {
        "name": "initial_model_state_cat",
        "label": "Initial Model State Cat",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_model_state_cat",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000017`."
      },
      {
        "name": "initial_cu_ii_zn_sod",
        "label": "Initial Cu Ii Zn Sod",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_cu_ii_zn_sod",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000002`."
      },
      {
        "name": "initial_model_state_o2",
        "label": "Initial Model State O2",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_model_state_o2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000001`."
      },
      {
        "name": "initial_looh",
        "label": "Initial Looh",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_looh",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000009`."
      },
      {
        "name": "initial_model_state_loo",
        "label": "Initial Model State Loo",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.initial_model_state_loo",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0000007`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.species_labels"
      },
      {
        "name": "so_dtotal",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.so_dtotal"
      },
      {
        "name": "cat",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.cat"
      },
      {
        "name": "cu_ii_zn_sod",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.cu_ii_zn_sod"
      },
      {
        "name": "model_state_o2",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.model_state_o2"
      },
      {
        "name": "looh",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.looh"
      },
      {
        "name": "loo",
        "maps_to": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.loo"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Kowald2006 Sod Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_kowald2006_sod_biomd0000000108_model",
      "alias": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_kowald2006_sod_biomd0000000108_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_kowald2006_sod_biomd0000000108_model_state"
      ],
      "from": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kowald2006_sod_biomd0000000108_model_summary"
      ],
      "from": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kowald2006_sod_biomd0000000108_model_species_labels"
      ],
      "from": "systemsbiology_sbml_kowald2006_sod_biomd0000000108_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is according to the paper from Axel Kowald Alternative pathways as mechanism for the negative effects associated with overexpression of superoxide dismutase. It can be used to explore systemsbiology kowald2006 sod BioModels0000000108 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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