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Yang2006 - Population Based Analysis Methadone Distribution Lab

About lab

Source-faithful physiology lab for Yang, Tong, Mccarver, Hines, Beard, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageyang2006-population-based-analysis-methadone-distribution-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_calcium_concentration",
        "label": "Initial Calcium Concentration",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.initial_calcium_concentration",
        "description": "Initial value for Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_c_concentration",
        "label": "Initial C Concentration",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.initial_c_concentration",
        "description": "Initial value for C Concentration. Maps to source symbol `C`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.variable_labels"
      },
      {
        "name": "calcium_concentration",
        "label": "Calcium Concentration",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.calcium_concentration",
        "description": "Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_concentration",
        "label": "C Concentration",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.c_concentration",
        "description": "C Concentration. Maps to source symbol `C`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "age",
        "label": "Age",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.age",
        "description": "Age. Maps to source symbol `age`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_va",
        "label": "Ca Va",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.ca_va",
        "description": "Ca Va. Maps to source symbol `Va`. Units: ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_vv",
        "label": "Ca Vv",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.ca_vv",
        "description": "Ca Vv. Maps to source symbol `Vv`. Units: ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_cv",
        "label": "Concentration Cv (source Cv)",
        "maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.concentration_cv",
        "description": "Concentration Cv (source Cv). Maps to source symbol `Cv`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
      }
    ]
  },
  "title": "Yang2006 - Population Based Analysis Methadone Distribution Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model",
      "alias": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model",
      "parameters": {
        "model_path": "data/yang_tong_mccarver_hines_beard_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_state"
      ],
      "from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_summary"
      ],
      "from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_trajectory"
      ],
      "from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_variable_labels"
      ],
      "from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Yang, Tong, Mccarver, Hines, Beard, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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