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Neves2008 - Role of cell shape and size in controlling intracellular signalling Lab

About lab

Clean Biosimulant lab for systems signaling model: Neves2008 - Role of cell shape and size in controlling intracellular signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageneves2008-role-of-cell-shape-and-size-in-controlling-intracellul
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_amp_cyto",
        "label": "Initial C AMP Cyto",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.initial_c_amp_cyto",
        "description": "Initial level of C AMP Cyto. Maps to SBML symbol `cAMP_cyto`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "ac_active_cyto_mem",
        "label": "AC active Cyto Mem",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.ac_active_cyto_mem",
        "description": "AC active Cyto Mem. Maps to SBML symbol `AC_active_cyto_mem` and is emitted in native SBML units."
      },
      {
        "name": "mapk_active_cyto",
        "label": "MAPK active Cyto",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.mapk_active_cyto",
        "description": "MAPK active Cyto. Maps to SBML symbol `MAPK_active_cyto` and is emitted in native SBML units."
      },
      {
        "name": "mek_active_cyto",
        "label": "MEK active Cyto",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.mek_active_cyto",
        "description": "MEK active Cyto. Maps to SBML symbol `MEK_active_cyto` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "gpcr"
  ],
  "title": "Neves2008 - Role of cell shape and size in controlling intracellular signalling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model",
      "alias": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_state"
      ],
      "from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_summary"
      ],
      "from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_species_labels"
      ],
      "from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Neves2008 - Role of cell shape and size in controlling intracellular signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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