About lab
Clean Biosimulant lab for systems signaling model: Hui2016 - Age-related changes in articular cartilage. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehui2016-age-related-changes-in-articular-cartilage-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebistress-responsevisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_natp_state",
"label": "Initial source-defined NATP state",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_source_defined_natp_state",
"description": "Initial level of source-defined NATP state. Maps to SBML symbol `NatP`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_sink_species",
"label": "Initial sink species",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_sink_species",
"description": "Initial level of sink species. Maps to SBML symbol `Sink`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source",
"label": "Initial Source",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_source",
"description": "Initial level of Source. Maps to SBML symbol `Source`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "acanm_rna",
"label": "Acanm RNA",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.acanm_rna",
"description": "Acanm RNA. Maps to SBML symbol `AcanmRNA` and is emitted in native SBML units."
},
{
"name": "caspase_a",
"label": "Caspase A",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.caspase_a",
"description": "Caspase A. Maps to SBML symbol `Caspase_A` and is emitted in native SBML units."
},
{
"name": "caspase_i",
"label": "Caspase I",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.caspase_i",
"description": "Caspase I. Maps to SBML symbol `Caspase_I` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"stress-response"
],
"title": "Hui2016 - Age-related changes in articular cartilage Lab",
"models": [
{
"path": "owned/models/signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model",
"alias": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_state"
],
"from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.state"
},
{
"to": [
"visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_summary"
],
"from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_species_labels"
],
"from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Hui2016 - Age-related changes in articular cartilage. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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