BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Hui2016 - Age-related changes in articular cartilage Lab

About lab

Clean Biosimulant lab for systems signaling model: Hui2016 - Age-related changes in articular cartilage. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehui2016-age-related-changes-in-articular-cartilage-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebistress-responsevisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_natp_state",
        "label": "Initial source-defined NATP state",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_source_defined_natp_state",
        "description": "Initial level of source-defined NATP state. Maps to SBML symbol `NatP`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_sink_species",
        "label": "Initial sink species",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_sink_species",
        "description": "Initial level of sink species. Maps to SBML symbol `Sink`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source",
        "label": "Initial Source",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.initial_source",
        "description": "Initial level of Source. Maps to SBML symbol `Source`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "acanm_rna",
        "label": "Acanm RNA",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.acanm_rna",
        "description": "Acanm RNA. Maps to SBML symbol `AcanmRNA` and is emitted in native SBML units."
      },
      {
        "name": "caspase_a",
        "label": "Caspase A",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.caspase_a",
        "description": "Caspase A. Maps to SBML symbol `Caspase_A` and is emitted in native SBML units."
      },
      {
        "name": "caspase_i",
        "label": "Caspase I",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.caspase_i",
        "description": "Caspase I. Maps to SBML symbol `Caspase_I` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "stress-response"
  ],
  "title": "Hui2016 - Age-related changes in articular cartilage Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model",
      "alias": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_state"
      ],
      "from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_summary"
      ],
      "from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model_species_labels"
      ],
      "from": "signaling_sbml_hui2016_age_related_changes_in_articular_cartila_biomd0000000560_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Hui2016 - Age-related changes in articular cartilage. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.