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Gidvani2012 Dna Replication Initiation Model In S Cevevisiae Lab

About lab

A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations. Model is encoded by Matthew Maire and submitted in BioModels by Kris.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagegidvani2012-dna-replication-initiation-model-in-s-cevevisiae-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cdt1c",
        "label": "Initial Cdt1c",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_cdt1c",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cdt1c`."
      },
      {
        "name": "initial_cdt1_total",
        "label": "Initial Cdt1 Total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_cdt1_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cdt1_total`."
      },
      {
        "name": "initial_cdc45n",
        "label": "Initial Cdc45n",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_cdc45n",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cdc45n`."
      },
      {
        "name": "initial_cdc45_total",
        "label": "Initial Cdc45 Total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_cdc45_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `cdc45_total`."
      },
      {
        "name": "initial_rc_total",
        "label": "Initial Rc Total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_rc_total",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rc_total`."
      },
      {
        "name": "initial_model_state_rc7",
        "label": "Initial Model State RC7",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.initial_model_state_rc7",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `rc7`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.species_labels"
      },
      {
        "name": "cdt1c",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.cdt1c"
      },
      {
        "name": "cdt1_total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.cdt1_total"
      },
      {
        "name": "cdc45n",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.cdc45n"
      },
      {
        "name": "cdc45_total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.cdc45_total"
      },
      {
        "name": "rc_total",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.rc_total"
      },
      {
        "name": "rc7",
        "maps_to": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.rc7"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Gidvani2012 Dna Replication Initiation Model In S Cevevisiae Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model",
      "alias": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model_state"
      ],
      "from": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.state"
    },
    {
      "to": [
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      ],
      "from": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model_species_labels"
      ],
      "from": "systemsbiology_sbml_gidvani2012_dna_replication_initiation_model_in_model2003180001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations. Model is encoded by Matthew Maire and submitted in BioModels by Kris.",
  "schema_version": "2.0"
}

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