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Perrett2014 - GnRH pulse, ERK activity Lab

About lab

Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageperrett2014-gnrh-pulse-erk-activity-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_hr_inact",
        "label": "Initial HR Inact",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.initial_hr_inact",
        "description": "Initial level of HR Inact. Maps to SBML symbol `species_11`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_mek_act",
        "label": "Initial MEK Act",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.initial_mek_act",
        "description": "Initial level of MEK Act. Maps to SBML symbol `species_14`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_p_erk_c",
        "label": "Initial P ERK C",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.initial_p_erk_c",
        "description": "Initial level of P ERK C. Maps to SBML symbol `species_13`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "nuclear_phosphorylated_erk",
        "label": "nuclear phosphorylated ERK",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.nuclear_phosphorylated_erk",
        "description": "nuclear phosphorylated ERK. Maps to SBML symbol `species_1` and is emitted in native SBML units."
      },
      {
        "name": "pp_erk_n",
        "label": "Pp ERK N",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.pp_erk_n",
        "description": "Pp ERK N. Maps to SBML symbol `species_2` and is emitted in native SBML units."
      },
      {
        "name": "cytosolic_phosphorylated_erk",
        "label": "cytosolic phosphorylated ERK",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.cytosolic_phosphorylated_erk",
        "description": "cytosolic phosphorylated ERK. Maps to SBML symbol `species_6` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "mapk",
    "ras-erk"
  ],
  "title": "Perrett2014 - GnRH pulse, ERK activity Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model",
      "alias": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model_state"
      ],
      "from": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model_summary"
      ],
      "from": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model_species_labels"
      ],
      "from": "signaling_sbml_perrett2014_gnrh_pulse_erk_activity_model1509050002_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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