About lab
Clean Biosimulant lab for systems signaling model: Mazein2013 - Shunt pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemazein2013-shunt-pathway-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tm7sf2",
"label": "Initial TM7SF2",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.initial_tm7sf2",
"description": "Initial level of TM7SF2. Maps to SBML symbol `s54`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_4_alpha_carboxyzymosterol",
"label": "4 Alpha Carboxyzymosterol",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.source_4_alpha_carboxyzymosterol",
"description": "4 Alpha Carboxyzymosterol. Maps to SBML symbol `s60` and is emitted in native SBML units."
},
{
"name": "source_4_alpha_carboxy_4_beta_response_parameter_methylzymosterol",
"label": "4 Alpha Carboxy 4 beta response parameter Methylzymosterol",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.source_4_alpha_carboxy_4_beta_response_parameter_methylzymosterol",
"description": "4 Alpha Carboxy 4 beta response parameter Methylzymosterol. Maps to SBML symbol `s55` and is emitted in native SBML units."
},
{
"name": "source_4_alpha_carboxy_4_beta_response_parameter_methyl_5_alpha_cholest_8_en_3_beta_response_parameter_ol",
"label": "4 Alpha Carboxy 4 beta response parameter Methyl 5 Alpha Cholest 8 En 3 beta response parameter Ol",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.source_4_alpha_carboxy_4_beta_response_parameter_methyl_5_alpha_cholest_8_en_3_beta_response_parameter_ol",
"description": "4 Alpha Carboxy 4 beta response parameter Methyl 5 Alpha Cholest 8 En 3 beta response parameter Ol. Maps to SBML symbol `s71` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Mazein2013 - Shunt pathway Lab",
"models": [
{
"path": "owned/models/signaling_sbml_mazein2013_shunt_pathway_model1409170003_model",
"alias": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_mazein2013_shunt_pathway_model1409170003_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_mazein2013_shunt_pathway_model1409170003_model_state"
],
"from": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.state"
},
{
"to": [
"visualisation.signaling_sbml_mazein2013_shunt_pathway_model1409170003_model_summary"
],
"from": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_mazein2013_shunt_pathway_model1409170003_model_species_labels"
],
"from": "signaling_sbml_mazein2013_shunt_pathway_model1409170003_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Mazein2013 - Shunt pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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