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Westermark2003 Pancreatic Glycosc Extended Lab

About lab

This is the extended model described in eq. 2 of the article: A model of phosphofructokinase and glycolytic oscillations in the pancreatic beta-cell.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagewestermark2003-pancreatic-glycosc-extended-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_intracellular_glucose",
        "label": "Initial Intracellular Glucose",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_intracellular_glucose",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GLC`."
      },
      {
        "name": "initial_g6_p_f6_p",
        "label": "Initial G6 P F6 P",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_g6_p_f6_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G6P_F6P`."
      },
      {
        "name": "initial_dhap_g3_p_pool",
        "label": "Initial Dhap G3 P Pool",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_dhap_g3_p_pool",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DHAP_G3P`."
      },
      {
        "name": "initial_fructose_1_6_biphosphate",
        "label": "Initial Fructose 1 6 Biphosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_fructose_1_6_biphosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FBP`."
      },
      {
        "name": "initial_glyceraldehyde_phosphate",
        "label": "Initial Glyceraldehyde Phosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_glyceraldehyde_phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G3P`."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "label": "Initial Fructose 6 Phosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_fructose_6_phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `F6P`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.species_labels"
      },
      {
        "name": "intracellular_glucose",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.intracellular_glucose"
      },
      {
        "name": "g6_p_f6_p",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.g6_p_f6_p"
      },
      {
        "name": "dhap_g3_p_pool",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.dhap_g3_p_pool"
      },
      {
        "name": "fructose_1_6_biphosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.fructose_1_6_biphosphate"
      },
      {
        "name": "glyceraldehyde_phosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.glyceraldehyde_phosphate"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.fructose_6_phosphate"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Westermark2003 Pancreatic Glycosc Extended Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model",
      "alias": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model_state"
      ],
      "from": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model_summary"
      ],
      "from": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model_species_labels"
      ],
      "from": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the extended model described in eq. 2 of the article: A model of phosphofructokinase and glycolytic oscillations in the pancreatic beta-cell.",
  "schema_version": "2.0"
}

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