About lab
This is the extended model described in eq. 2 of the article: A model of phosphofructokinase and glycolytic oscillations in the pancreatic beta-cell.
Runtime
Duration1
Comms Step0.1
Runs
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Completed0
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Metadata
Packagewestermark2003-pancreatic-glycosc-extended-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_glucose",
"label": "Initial Intracellular Glucose",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_intracellular_glucose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GLC`."
},
{
"name": "initial_g6_p_f6_p",
"label": "Initial G6 P F6 P",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_g6_p_f6_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G6P_F6P`."
},
{
"name": "initial_dhap_g3_p_pool",
"label": "Initial Dhap G3 P Pool",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_dhap_g3_p_pool",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DHAP_G3P`."
},
{
"name": "initial_fructose_1_6_biphosphate",
"label": "Initial Fructose 1 6 Biphosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_fructose_1_6_biphosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FBP`."
},
{
"name": "initial_glyceraldehyde_phosphate",
"label": "Initial Glyceraldehyde Phosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_glyceraldehyde_phosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `G3P`."
},
{
"name": "initial_fructose_6_phosphate",
"label": "Initial Fructose 6 Phosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.initial_fructose_6_phosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `F6P`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.species_labels"
},
{
"name": "intracellular_glucose",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.intracellular_glucose"
},
{
"name": "g6_p_f6_p",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.g6_p_f6_p"
},
{
"name": "dhap_g3_p_pool",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.dhap_g3_p_pool"
},
{
"name": "fructose_1_6_biphosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.fructose_1_6_biphosphate"
},
{
"name": "glyceraldehyde_phosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.glyceraldehyde_phosphate"
},
{
"name": "fructose_6_phosphate",
"maps_to": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.fructose_6_phosphate"
}
]
},
"tags": [
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Westermark2003 Pancreatic Glycosc Extended Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model",
"alias": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model_state"
],
"from": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.state"
},
{
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],
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{
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],
"from": "systemsbiology_sbml_westermark2003_pancreatic_glycosc_extended_biomd0000000236_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This is the extended model described in eq. 2 of the article: A model of phosphofructokinase and glycolytic oscillations in the pancreatic beta-cell.",
"schema_version": "2.0"
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