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Model-based prediction of SARS-CoV-2 in Ethiopia: Extended SEIR model Lab

About lab

Single-model lab wrapper for Model-based prediction of SARS-CoV-2 in Ethiopia: Extended SEIR model. One of three models used to describe dynamics of COVID-19 spread in Ethiopia. Here the two investigated population groups healthcare workers and community members are modeled as separate but interacti.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemodel-based-prediction-of-sars-cov-2-in-ethiopia-extended-seir-m
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "community_transmission_rate",
        "label": "Community Transmission Rate",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.community_transmission_rate"
      },
      {
        "name": "incubation_period",
        "label": "Incubation Period",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.incubation_period"
      },
      {
        "name": "recovery_period",
        "label": "Recovery Period",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.recovery_period"
      },
      {
        "name": "initial_infected",
        "label": "Initial Infected",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.initial_infected"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.species_labels"
      },
      {
        "name": "susceptible_community",
        "label": "Susceptible community",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.susceptible_community"
      },
      {
        "name": "exposed_community",
        "label": "Exposed community",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.exposed_community"
      },
      {
        "name": "infected_community",
        "label": "Infected community",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.infected_community"
      },
      {
        "name": "recovered_community",
        "label": "Recovered community",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.recovered_community"
      },
      {
        "name": "susceptible_healthcare_workers",
        "label": "Susceptible healthcare workers",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.susceptible_healthcare_workers"
      },
      {
        "name": "exposed_healthcare_workers",
        "label": "Exposed healthcare workers",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.exposed_healthcare_workers"
      },
      {
        "name": "infected_healthcare_workers",
        "label": "Infected healthcare workers",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.infected_healthcare_workers"
      },
      {
        "name": "recovered_healthcare_workers",
        "label": "Recovered healthcare workers",
        "maps_to": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.recovered_healthcare_workers"
      }
    ]
  },
  "title": "Model-based prediction of SARS-CoV-2 in Ethiopia: Extended SEIR model Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model",
      "alias": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model",
      "parameters": {
        "model_path": "data/MODEL2212310001.sbml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model_state"
      ],
      "from": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model_summary"
      ],
      "from": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model_species_labels"
      ],
      "from": "epidemiology_sbml_model_based_prediction_of_sars_cov_2_in_ethiopia_model2212310001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Model-based prediction of SARS-CoV-2 in Ethiopia: Extended SEIR model. One of three models used to describe dynamics of COVID-19 spread in Ethiopia. Here the two investigated population groups healthcare workers and community members are modeled as separate but interacti.",
  "schema_version": "2.0"
}

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