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Sible2007 - Mitotic cell cycle mecanism in Xenopus Laevis Lab

About lab

Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagesible2007-mitotic-cell-cycle-mecanism-in-xenopus-laevis-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_apc_total",
        "label": "Initial APC Total",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_apc_total",
        "description": "Initial level of APC Total. Maps to SBML symbol `APC_total`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cdc25",
        "label": "Initial Cdc25",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_cdc25",
        "description": "Initial level of Cdc25. Maps to SBML symbol `Cdc25`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_cdc25_total",
        "label": "Initial Cdc25 Total",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_cdc25_total",
        "description": "Initial level of Cdc25 Total. Maps to SBML symbol `Cdc25_total`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "cdc25_phosphorylated",
        "label": "Cdc25 Phosphorylated",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.cdc25_phosphorylated",
        "description": "Cdc25 Phosphorylated. Maps to SBML symbol `Cdc25_phosphorylated` and is emitted in native SBML units."
      },
      {
        "name": "wee1_phosphorylated",
        "label": "Wee1 Phosphorylated",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.wee1_phosphorylated",
        "description": "Wee1 Phosphorylated. Maps to SBML symbol `Wee1_phosphorylated` and is emitted in native SBML units."
      },
      {
        "name": "ie_phosphorylated",
        "label": "IE Phosphorylated",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.ie_phosphorylated",
        "description": "IE Phosphorylated. Maps to SBML symbol `IE_phosphorylated` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cell-cycle-signaling"
  ],
  "title": "Sible2007 - Mitotic cell cycle mecanism in Xenopus Laevis Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model",
      "alias": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_state"
      ],
      "from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_summary"
      ],
      "from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_species_labels"
      ],
      "from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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