About lab
Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesible2007-mitotic-cell-cycle-mecanism-in-xenopus-laevis-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_apc_total",
"label": "Initial APC Total",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_apc_total",
"description": "Initial level of APC Total. Maps to SBML symbol `APC_total`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cdc25",
"label": "Initial Cdc25",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_cdc25",
"description": "Initial level of Cdc25. Maps to SBML symbol `Cdc25`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cdc25_total",
"label": "Initial Cdc25 Total",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.initial_cdc25_total",
"description": "Initial level of Cdc25 Total. Maps to SBML symbol `Cdc25_total`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "cdc25_phosphorylated",
"label": "Cdc25 Phosphorylated",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.cdc25_phosphorylated",
"description": "Cdc25 Phosphorylated. Maps to SBML symbol `Cdc25_phosphorylated` and is emitted in native SBML units."
},
{
"name": "wee1_phosphorylated",
"label": "Wee1 Phosphorylated",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.wee1_phosphorylated",
"description": "Wee1 Phosphorylated. Maps to SBML symbol `Wee1_phosphorylated` and is emitted in native SBML units."
},
{
"name": "ie_phosphorylated",
"label": "IE Phosphorylated",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.ie_phosphorylated",
"description": "IE Phosphorylated. Maps to SBML symbol `IE_phosphorylated` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cell-cycle-signaling"
],
"title": "Sible2007 - Mitotic cell cycle mecanism in Xenopus Laevis Lab",
"models": [
{
"path": "owned/models/signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model",
"alias": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_state"
],
"from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_summary"
],
"from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model_species_labels"
],
"from": "signaling_sbml_sible2007_mitotic_cell_cycle_mecanism_in_xenopus_biomd0000000942_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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