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Waugh2006 Woundhealing Diabetic Modela Lab

About lab

This a model from the article: Modeling the effects of treating diabetic wounds with engineered skinsubstitutes. It can be used to explore systemsbiology waugh2006 woundhealing diabetic modela model1006230106 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagewaugh2006-woundhealing-diabetic-modela-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_phi_r",
        "label": "Initial Phi R",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_phi_r",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phi_R`."
      },
      {
        "name": "initial_phi_i",
        "label": "Initial Phi I",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_phi_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phi_I`."
      },
      {
        "name": "initial_model_state_t",
        "label": "Initial Model State T",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_t",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T`."
      },
      {
        "name": "initial_model_state_p",
        "label": "Initial Model State P",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P`."
      },
      {
        "name": "initial_model_state_h",
        "label": "Initial Model State H",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_h",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `H`."
      },
      {
        "name": "initial_model_state_f",
        "label": "Initial Model State F",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_f",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `F`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.species_labels"
      },
      {
        "name": "phi_r",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.phi_r"
      },
      {
        "name": "phi_i",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.phi_i"
      },
      {
        "name": "model_state_t",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_t"
      },
      {
        "name": "model_state_p",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_p"
      },
      {
        "name": "model_state_h",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_h"
      },
      {
        "name": "model_state_f",
        "maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_f"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Waugh2006 Woundhealing Diabetic Modela Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model",
      "alias": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_state"
      ],
      "from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_summary"
      ],
      "from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_species_labels"
      ],
      "from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Modeling the effects of treating diabetic wounds with engineered skinsubstitutes. It can be used to explore systemsbiology waugh2006 woundhealing diabetic modela model1006230106 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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