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Proctor2007 Age Related Decline Of Proteolysis Ubiquitin Proteome Syst Lab

About lab

Proctor2007 - Age related decline of proteolysis, ubiquitin-proteome system This is a stochastic model of the ubiquitin-proteasome system for a generic pool of native proteins (NatP), which have a hal. It can be used to explore systemsbiology proctor2007 age related decline of dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageproctor2007-age-related-decline-of-proteolysis-ubiquitin-proteom
Created2026-05-17
Updated2026-05-17
generegulationmetabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
      },
      {
        "name": "initial_model_state_amp",
        "label": "Initial Model State AMP",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_model_state_amp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AMP`."
      },
      {
        "name": "initial_model_state_adp",
        "label": "Initial Model State ADP",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_model_state_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP`."
      },
      {
        "name": "initial_model_state_ub",
        "label": "Initial Model State Ub",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_model_state_ub",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ub`."
      },
      {
        "name": "initial_nat_p",
        "label": "Initial Nat P",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_nat_p",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NatP`."
      },
      {
        "name": "initial_model_state_dub",
        "label": "Initial Model State Dub",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.initial_model_state_dub",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DUB`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.species_labels"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.atp"
      },
      {
        "name": "amp",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.amp"
      },
      {
        "name": "adp",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.adp"
      },
      {
        "name": "model_state_ub",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.model_state_ub"
      },
      {
        "name": "nat_p",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.nat_p"
      },
      {
        "name": "dub",
        "maps_to": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.dub"
      }
    ]
  },
  "tags": [
    "generegulation",
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Proctor2007 Age Related Decline Of Proteolysis Ubiquitin Proteome Syst Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model",
      "alias": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model_state"
      ],
      "from": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model_summary"
      ],
      "from": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model_species_labels"
      ],
      "from": "systemsbiology_sbml_proctor2007_age_related_decline_of_proteolysis_u_biomd0000000105_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Proctor2007 - Age related decline of proteolysis, ubiquitin-proteome system This is a stochastic model of the ubiquitin-proteasome system for a generic pool of native proteins (NatP), which have a hal. It can be used to explore systemsbiology proctor2007 age related decline of dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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