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Goldbeter2007_Somitogenesis_Switch Lab

About lab

Clean Biosimulant lab for systems signaling model: Goldbeter2007_Somitogenesis_Switch. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagegoldbeter2007-somitogenesis-switch-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_ra_state",
        "label": "Initial source-defined RA state",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.initial_source_defined_ra_state",
        "description": "Initial level of source-defined RA state. Maps to SBML symbol `RA`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "cyp26_m_rna",
        "label": "Cyp26 M RNA",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.cyp26_m_rna",
        "description": "Cyp26 M RNA. Maps to SBML symbol `M_C` and is emitted in native SBML units."
      },
      {
        "name": "cyp26",
        "label": "CYP26",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.cyp26",
        "description": "CYP26. Maps to SBML symbol `C` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_fgf_state",
        "label": "source-defined FGF state",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.source_defined_fgf_state",
        "description": "source-defined FGF state. Maps to SBML symbol `F` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Goldbeter2007_Somitogenesis_Switch Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model",
      "alias": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_state"
      ],
      "from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_summary"
      ],
      "from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_species_labels"
      ],
      "from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Goldbeter2007_Somitogenesis_Switch. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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