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Simon2021 - Novel Insights E Lab

About lab

Source-faithful physiology lab for Simon-Chica et al. (2021) Novel insights into the electrophysiology of murine cardiac macrophages. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagesimon2021-novel-insights-e-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_v",
        "label": "Initial Model State V (source V)",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.initial_model_state_v",
        "description": "Initial value for Model State V (source V). Maps to source symbol `V`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "mV"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.variable_labels"
      },
      {
        "name": "membrane_capacitance",
        "label": "Membrane Capacitance",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.membrane_capacitance",
        "description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: uF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_v",
        "label": "Model State V (source V)",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_state_v",
        "description": "Model State V (source V). Maps to source symbol `V`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "gkir",
        "label": "Gkir",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.gkir",
        "description": "Gkir. Maps to source symbol `GKir`. Units: mS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ib_eb",
        "label": "Ib Eb",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.ib_eb",
        "description": "Ib Eb. Maps to source symbol `Eb`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_k_e",
        "label": "Model Parameter K E (source K_e)",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_parameter_k_e",
        "description": "Model Parameter K E (source K_e). Maps to source symbol `K_e`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_variable_ib",
        "label": "Model Variable Ib (source Ib)",
        "maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_variable_ib",
        "description": "Model Variable Ib (source Ib). Maps to source symbol `Ib`. Units: A_per_F. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Simon2021 - Novel Insights E Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model",
      "alias": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model",
      "parameters": {
        "model_path": "data/type0.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_state"
      ],
      "from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_summary"
      ],
      "from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_trajectory"
      ],
      "from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_variable_labels"
      ],
      "from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Simon-Chica et al. (2021) Novel insights into the electrophysiology of murine cardiac macrophages. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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