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Albert2005 Glycolysis Lab

About lab

This model is from the article: Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei. Albert MA, Haanstra JR, Hannaert V, Van Roy J, Opperdoes FR, Bakk.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagealbert2005-glycolysis-lab
Created2026-05-17
Updated2026-05-17
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_external",
        "label": "Initial Glucose External",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glucose_external",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_25`."
      },
      {
        "name": "initial_pyruvate_external",
        "label": "Initial Pyruvate External",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_pyruvate_external",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_26`."
      },
      {
        "name": "initial_glycerol_external",
        "label": "Initial Glycerol External",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glycerol_external",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_27`."
      },
      {
        "name": "initial_glycerol3phosphate",
        "label": "Initial Glycerol3phosphate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glycerol3phosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_22`."
      },
      {
        "name": "initial_pyruvate",
        "label": "Initial Pyruvate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_pyruvate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
      },
      {
        "name": "initial_fructose16bisphosphate",
        "label": "Initial Fructose16bisphosphate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_fructose16bisphosphate",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_16`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.species_labels"
      },
      {
        "name": "glucose_external",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glucose_external"
      },
      {
        "name": "pyruvate_external",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.pyruvate_external"
      },
      {
        "name": "glycerol_external",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glycerol_external"
      },
      {
        "name": "glycerol3phosphate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glycerol3phosphate"
      },
      {
        "name": "pyruvate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.pyruvate"
      },
      {
        "name": "fructose16bisphosphate",
        "maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.fructose16bisphosphate"
      }
    ]
  },
  "tags": [
    "metabolism",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Albert2005 Glycolysis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model",
      "alias": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_state"
      ],
      "from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_summary"
      ],
      "from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_species_labels"
      ],
      "from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei. Albert MA, Haanstra JR, Hannaert V, Van Roy J, Opperdoes FR, Bakk.",
  "schema_version": "2.0"
}

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