BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Niederer2006 - Hunter Smith Lab

About lab

Source-faithful physiology lab for Niederer, Hunter, Smith, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageniederer2006-hunter-smith-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_q_1",
        "label": "Initial Model State Q 1 (source Q_1)",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.initial_model_state_q_1",
        "description": "Initial value for Model State Q 1 (source Q_1). Maps to source symbol `Q_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_model_state_q_2",
        "label": "Initial Model State Q 2 (source Q_2)",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.initial_model_state_q_2",
        "description": "Initial value for Model State Q 2 (source Q_2). Maps to source symbol `Q_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.variable_labels"
      },
      {
        "name": "alpha_0",
        "label": "Alpha 0",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_0",
        "description": "Alpha 0. Maps to source symbol `alpha_0`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_1",
        "label": "Alpha 1",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_1",
        "description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_2",
        "label": "Alpha 2",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_2",
        "description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_3",
        "label": "Alpha 3",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_3",
        "description": "Alpha 3. Maps to source symbol `alpha_3`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_r1",
        "label": "Alpha R1",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_r1",
        "description": "Alpha R1. Maps to source symbol `alpha_r1`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_r2",
        "label": "Alpha R2",
        "maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_r2",
        "description": "Alpha R2. Maps to source symbol `alpha_r2`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Niederer2006 - Hunter Smith Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model",
      "alias": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model",
      "parameters": {
        "model_path": "data/niederer_hunter_smith_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_state"
      ],
      "from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_summary"
      ],
      "from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_trajectory"
      ],
      "from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_variable_labels"
      ],
      "from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Niederer, Hunter, Smith, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.