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Gross1999 - Effects pH Kinetic Parameters Na Hco3 Cotransporter Renal Lab

About lab

Source-faithful physiology lab for Gross and Hopfer, 1999. Public controls and outputs are mapped to real source symbols for transport physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagegross1999-effects-ph-kinetic-parameters-na-hco3-cotransporter-re
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_6_temp",
        "label": "Initial C 6 Temp",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.initial_c_6_temp",
        "description": "Initial value for C 6 Temp. Maps to source symbol `C_6_temp`. Units: pmol_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "pmol_per_cm2"
        ]
      },
      {
        "name": "initial_model_state_c_1",
        "label": "Initial Model State C 1 (source C_1)",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.initial_model_state_c_1",
        "description": "Initial value for Model State C 1 (source C_1). Maps to source symbol `C_1`. Units: pmol_per_cm2. Naming evidence: source symbol is too ambiguous for a stronger public label.",
        "accepted_units": [
          "pmol_per_cm2"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.variable_labels"
      },
      {
        "name": "i_nbc_micro",
        "label": "I Nbc Micro",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.i_nbc_micro",
        "description": "I Nbc Micro. Maps to source symbol `I_NBC_micro`. Units: uA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_nbc_ss",
        "label": "I Nbc Ss",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.i_nbc_ss",
        "description": "I Nbc Ss. Maps to source symbol `I_NBC_SS`. Units: nA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "extracellular_sodium",
        "label": "Extracellular Sodium",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.extracellular_sodium",
        "description": "Extracellular Sodium. Maps to source symbol `Na_o`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_nbc",
        "label": "I Nbc",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.i_nbc",
        "description": "I Nbc. Maps to source symbol `I_NBC`. Units: nA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_6_temp",
        "label": "C 6 Temp",
        "maps_to": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.c_6_temp",
        "description": "C 6 Temp. Maps to source symbol `C_6_temp`. Units: pmol_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Gross1999 - Effects pH Kinetic Parameters Na Hco3 Cotransporter Renal Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model",
      "alias": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model",
      "parameters": {
        "model_path": "data/gross_and_hopfer_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model_state"
      ],
      "from": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model_summary"
      ],
      "from": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model_trajectory"
      ],
      "from": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model_variable_labels"
      ],
      "from": "physiology_cellml_gross_and_hopfer_1999_grossandhopfer1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Gross and Hopfer, 1999. Public controls and outputs are mapped to real source symbols for transport physiology.",
  "schema_version": "2.0"
}

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