Sveiczer2000 - Modeling Fission Yeast Cell Cycle Quantized Cycle Times Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cell_cycle_state_cr",
        "label": "Initial Cell Cycle State Cr (source CR)",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.initial_cell_cycle_state_cr",
        "description": "Initial value for Cell Cycle State Cr (source CR). Maps to source symbol `CR`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cell_cycle_state_pi",
        "label": "Initial Cell Cycle State Pi (source PI)",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.initial_cell_cycle_state_pi",
        "description": "Initial value for Cell Cycle State Pi (source PI). Maps to source symbol `PI`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.variable_labels"
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cell_cycle_state_cr",
        "label": "Cell Cycle State Cr (source CR)",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.cell_cycle_state_cr",
        "description": "Cell Cycle State Cr (source CR). Maps to source symbol `CR`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
      },
      {
        "name": "cell_cycle_state_pi",
        "label": "Cell Cycle State Pi (source PI)",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.cell_cycle_state_pi",
        "description": "Cell Cycle State Pi (source PI). Maps to source symbol `PI`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
      },
      {
        "name": "cdc25",
        "label": "Cdc25",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.cdc25",
        "description": "Cdc25. Maps to source symbol `Cdc25`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "crp",
        "label": "Crp",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.crp",
        "description": "Crp. Maps to source symbol `CRP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "inh",
        "label": "Inh",
        "maps_to": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.inh",
        "description": "Inh. Maps to source symbol `Inh`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Sveiczer2000 - Modeling Fission Yeast Cell Cycle Quantized Cycle Times Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model",
      "alias": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model",
      "parameters": {
        "model_path": "data/sveiczer_csikasznagy_gyorffy_tyson_novak_2000.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model_state"
      ],
      "from": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model_summary"
      ],
      "from": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model_trajectory"
      ],
      "from": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model_variable_labels"
      ],
      "from": "physiology_cellml_sveiczer_csikasznagy_gyorffy_tyson_novak_2000_sveiczercsikasznagygyorffytysonnovak2000_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Sveiczer, Csikasznagy, Gyorffy, Tyson, Novak, 2000. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}