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Schittler2010 Progenitor Cell Fate Lab

About lab

Mesenchymal progenitor fate model for osteoblast or chondrocyte differentiation executed directly from SBML.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageschittler2010-progenitor-cell-fate-lab
Created2026-05-15
Updated2026-05-15
developmentsbmltelluriumfaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "starting_progenitor_cells",
        "label": "Starting progenitor cells",
        "units": "native SBML value",
        "default": 12.03,
        "maps_to": "schittler2010_progenitor_fate.starting_progenitor_cells",
        "description": "Setup-time initial progenitor-cell state. Maps to SBML symbol `P`."
      },
      {
        "name": "starting_bone_fate_cells",
        "label": "Starting bone-fate cells",
        "units": "native SBML value",
        "default": 0.14,
        "maps_to": "schittler2010_progenitor_fate.starting_bone_fate_cells",
        "description": "Setup-time initial osteoblast or bone-fate cell state. Maps to SBML symbol `O`."
      },
      {
        "name": "starting_cartilage_fate_cells",
        "label": "Starting cartilage-fate cells",
        "units": "native SBML value",
        "default": 0.14,
        "maps_to": "schittler2010_progenitor_fate.starting_cartilage_fate_cells",
        "description": "Setup-time initial chondrocyte or cartilage-fate cell state. Maps to SBML symbol `C`."
      }
    ],
    "outputs": [
      {
        "name": "progenitor_cells",
        "label": "Progenitor cells",
        "maps_to": "schittler2010_progenitor_fate.progenitor_cells",
        "description": "Progenitor cells. Maps to SBML symbol `P`."
      },
      {
        "name": "osteoblast_cells",
        "label": "Osteoblast cells",
        "maps_to": "schittler2010_progenitor_fate.osteoblast_cells",
        "description": "Osteoblast cells. Maps to SBML symbol `O`."
      },
      {
        "name": "chondrocyte_cells",
        "label": "Chondrocyte cells",
        "maps_to": "schittler2010_progenitor_fate.chondrocyte_cells",
        "description": "Chondrocyte cells. Maps to SBML symbol `C`."
      },
      {
        "name": "state",
        "maps_to": "schittler2010_progenitor_fate.state",
        "description": "Full friendly observable record."
      },
      {
        "name": "summary",
        "maps_to": "schittler2010_progenitor_fate.summary",
        "description": "Core model run summary."
      },
      {
        "name": "species_labels",
        "maps_to": "schittler2010_progenitor_fate.species_labels",
        "description": "Friendly observable display labels."
      }
    ]
  },
  "title": "Schittler2010 Progenitor Cell Fate Lab",
  "models": [
    {
      "path": "owned/models/schittler2010_progenitor_fate",
      "alias": "schittler2010_progenitor_fate",
      "parameters": {
        "model_path": "data/BIOMD0000000493.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/schittler2010_progenitor_fate"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.core_state"
      ],
      "from": "schittler2010_progenitor_fate.state"
    },
    {
      "to": [
        "visualisation.core_summary"
      ],
      "from": "schittler2010_progenitor_fate.summary"
    },
    {
      "to": [
        "visualisation.core_species_labels"
      ],
      "from": "schittler2010_progenitor_fate.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Mesenchymal progenitor fate model for osteoblast or chondrocyte differentiation executed directly from SBML.",
  "schema_version": "2.0"
}

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