About lab
Source-faithful physiology lab for Hai and Murphy 1988. Public controls and outputs are mapped to real source symbols for source-model physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagehai1988-cross-bridge-phosphorylation-regulation-latch-state-smoo
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_amp",
"label": "Initial Amp",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.initial_amp",
"description": "Initial value for Amp. Maps to source symbol `AMp`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_attached_crossbridge_am",
"label": "Initial Attached Crossbridge Am (source AM)",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.initial_attached_crossbridge_am",
"description": "Initial value for Attached Crossbridge Am (source AM). Maps to source symbol `AM`. Units: dimensionless. Naming evidence: cross-bridge/latch-state model context supports a conservative cross-bridge state label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.variable_labels"
},
{
"name": "amp",
"label": "Amp",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.amp",
"description": "Amp. Maps to source symbol `AMp`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "attached_crossbridge_am",
"label": "Attached Crossbridge Am (source AM)",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.attached_crossbridge_am",
"description": "Attached Crossbridge Am (source AM). Maps to source symbol `AM`. Units: dimensionless. Naming evidence: cross-bridge/latch-state model context supports a conservative cross-bridge state label."
},
{
"name": "detached_crossbridge_m",
"label": "Detached Crossbridge M (source M)",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.detached_crossbridge_m",
"description": "Detached Crossbridge M (source M). Maps to source symbol `M`. Units: dimensionless. Naming evidence: cross-bridge/latch-state model context supports a conservative cross-bridge state label."
},
{
"name": "phosphorylated_detached_crossbridge_mp",
"label": "Phosphorylated Detached Crossbridge Mp (source Mp)",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.phosphorylated_detached_crossbridge_mp",
"description": "Phosphorylated Detached Crossbridge Mp (source Mp). Maps to source symbol `Mp`. Units: dimensionless. Naming evidence: cross-bridge/latch-state model context supports a conservative cross-bridge state label."
},
{
"name": "model_parameters_k1",
"label": "Model Parameters K1",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.model_parameters_k1",
"description": "Model Parameters K1. Maps to source symbol `k1`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameters_k2",
"label": "Model Parameters K2",
"maps_to": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.model_parameters_k2",
"description": "Model Parameters K2. Maps to source symbol `k2`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Hai1988 - Cross Bridge Phosphorylation Regulation Latch State Smooth Lab",
"models": [
{
"path": "owned/models/physiology_cellml_hai_and_murphy_1988_haimurphy1988_model",
"alias": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model",
"parameters": {
"model_path": "data/hai_1988.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_hai_and_murphy_1988_haimurphy1988_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_hai_and_murphy_1988_haimurphy1988_model_state"
],
"from": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.state"
},
{
"to": [
"visualisation.physiology_cellml_hai_and_murphy_1988_haimurphy1988_model_summary"
],
"from": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_hai_and_murphy_1988_haimurphy1988_model_trajectory"
],
"from": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_hai_and_murphy_1988_haimurphy1988_model_variable_labels"
],
"from": "physiology_cellml_hai_and_murphy_1988_haimurphy1988_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Hai and Murphy 1988. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
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