About lab
Clean Biosimulant lab for systems signaling model: Zeilfelder2025 - Model for primary human hepatocytes (PHH). Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagezeilfelder2025-model-for-primary-human-hepatocytes-phh-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicytokine-signalinginterleukin-signalingsmadvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_input_apap_level",
"label": "Input Apap",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.initial_input_apap_level",
"description": "Input Apap source parameter. Maps to SBML symbol `input_apap` and preserves the bundled default."
},
{
"name": "initial_input_cyclo_level",
"label": "Input Cyclo",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.initial_input_cyclo_level",
"description": "Input Cyclo source parameter. Maps to SBML symbol `input_cyclo` and preserves the bundled default."
},
{
"name": "initial_input_dcf_level",
"label": "Input Dcf",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.initial_input_dcf_level",
"description": "Input Dcf source parameter. Maps to SBML symbol `input_dcf` and preserves the bundled default."
}
],
"outputs": [
{
"name": "inactive_receptor",
"label": "Inactive Receptor",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.inactive_receptor",
"description": "Inactive Receptor. Maps to SBML symbol `JAK1_gp130` and is emitted in native SBML units."
},
{
"name": "total_phosphorylated_receptor",
"label": "Total Phosphorylated Receptor",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.total_phosphorylated_receptor",
"description": "Total Phosphorylated Receptor. Maps to SBML symbol `pJAK1_pgp130` and is emitted in native SBML units."
},
{
"name": "unphosphorylated_stat3",
"label": "Unphosphorylated STAT3",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.unphosphorylated_stat3",
"description": "Unphosphorylated STAT3. Maps to SBML symbol `STAT3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cytokine-signaling",
"interleukin-signaling",
"smad"
],
"title": "Zeilfelder2025 - Model for primary human hepatocytes (PHH) Lab",
"models": [
{
"path": "owned/models/signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model",
"alias": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model_state"
],
"from": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.state"
},
{
"to": [
"visualisation.signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model_summary"
],
"from": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model_species_labels"
],
"from": "signaling_sbml_zeilfelder2025_model_for_primary_human_hepatocyt_model2503270002_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Zeilfelder2025 - Model for primary human hepatocytes (PHH). Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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