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Brown2004 - NGF and EGF signaling Lab

About lab

Clean Biosimulant lab for systems signaling model: Brown2004 - NGF and EGF signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebrown2004-ngf-and-egf-signaling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebineurosciencevisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_kegf_state_level",
        "label": "source-defined KEGF state",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_source_defined_kegf_state_level",
        "description": "source-defined KEGF state source parameter. Maps to SBML symbol `kEGF` and preserves the bundled default."
      },
      {
        "name": "initial_km_egf_level",
        "label": "Km EGF",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_km_egf_level",
        "description": "Km EGF source parameter. Maps to SBML symbol `KmEGF` and preserves the bundled default."
      },
      {
        "name": "initial_krb_egf_level",
        "label": "Krb EGF",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_krb_egf_level",
        "description": "Krb EGF source parameter. Maps to SBML symbol `krbEGF` and preserves the bundled default."
      }
    ],
    "outputs": [
      {
        "name": "free_egfreceptor",
        "label": "free Egfreceptor",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.free_egfreceptor",
        "description": "free Egfreceptor. Maps to SBML symbol `freeEGFReceptor` and is emitted in native SBML units."
      },
      {
        "name": "bound_egfreceptor",
        "label": "bound Egfreceptor",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.bound_egfreceptor",
        "description": "bound Egfreceptor. Maps to SBML symbol `boundEGFReceptor` and is emitted in native SBML units."
      },
      {
        "name": "free_ngfreceptor",
        "label": "free Ngfreceptor",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.free_ngfreceptor",
        "description": "free Ngfreceptor. Maps to SBML symbol `freeNGFReceptor` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "neuroscience"
  ],
  "title": "Brown2004 - NGF and EGF signaling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model",
      "alias": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_state"
      ],
      "from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_summary"
      ],
      "from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_species_labels"
      ],
      "from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Brown2004 - NGF and EGF signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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