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Adams2012 Locke2006 Circadian Rhythm Model Refined With Input Signal Lab

About lab

As per BIO0000000089.xml but including a functional light. It can be used to explore systemsbiology adams2012 locke2006 circadian rhythm refin dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageadams2012-locke2006-circadian-rhythm-model-refined-with-input-si
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "light_amplitude",
        "label": "Light Amplitude",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_amplitude",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightAmplitude`."
      },
      {
        "name": "light_offset",
        "label": "Light Offset",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_offset",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightOffset`."
      },
      {
        "name": "twilight_period",
        "label": "Twilight Period",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.twilight_period",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `twilightPeriod`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.species_labels"
      },
      {
        "name": "ppr7_9_mrna",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_mrna"
      },
      {
        "name": "toc1_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.toc1_protein_in_cytoplasm"
      },
      {
        "name": "x_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.x_protein_in_cytoplasm"
      },
      {
        "name": "ppr7_9_protein_in_nucleus",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_protein_in_nucleus"
      },
      {
        "name": "light_sensitive_protein_p",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_sensitive_protein_p"
      },
      {
        "name": "ppr7_9_protein_in_cytoplasm",
        "maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_protein_in_cytoplasm"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Adams2012 Locke2006 Circadian Rhythm Model Refined With Input Signal Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model",
      "alias": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_state"
      ],
      "from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_summary"
      ],
      "from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_species_labels"
      ],
      "from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "As per BIO0000000089.xml but including a functional light. It can be used to explore systemsbiology adams2012 locke2006 circadian rhythm refin dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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