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Bhalla1999 - Complete Network Iyengar Lab

About lab

Source-faithful physiology lab for Bhalla, Iyengar, 1999. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhalla1999-complete-network-iyengar-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_inositol_trisphosphate",
        "label": "Initial Inositol Trisphosphate",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.initial_inositol_trisphosphate",
        "description": "Initial value for Inositol Trisphosphate. Maps to source symbol `IP3`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "um"
        ]
      },
      {
        "name": "initial_aadagpkc",
        "label": "Initial Aadagpkc",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.initial_aadagpkc",
        "description": "Initial value for Aadagpkc. Maps to source symbol `AADAGPKC`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "um"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.variable_labels"
      },
      {
        "name": "inositol_trisphosphate",
        "label": "Inositol Trisphosphate",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.inositol_trisphosphate",
        "description": "Inositol Trisphosphate. Maps to source symbol `IP3`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "aadagpkc",
        "label": "Aadagpkc",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.aadagpkc",
        "description": "Aadagpkc. Maps to source symbol `AADAGPKC`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "apc",
        "label": "Apc",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.apc",
        "description": "Apc. Maps to source symbol `APC`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_pkc",
        "label": "Ca Pkc",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.ca_pkc",
        "description": "Ca Pkc. Maps to source symbol `CaPKC`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_pla2",
        "label": "Ca Pla2",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.ca_pla2",
        "description": "Ca Pla2. Maps to source symbol `CaPLA2`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_pla2_star",
        "label": "Ca Pla2 Star",
        "maps_to": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.ca_pla2_star",
        "description": "Ca Pla2 Star. Maps to source symbol `CaPLA2_star`. Units: um. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Bhalla1999 - Complete Network Iyengar Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model",
      "alias": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model",
      "parameters": {
        "model_path": "data/bhalla_iyengar_1999_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model_state"
      ],
      "from": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model_summary"
      ],
      "from": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model_trajectory"
      ],
      "from": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model_variable_labels"
      ],
      "from": "physiology_cellml_bhalla_iyengar_1999_bhallaiyengar1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Bhalla, Iyengar, 1999. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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