About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageschoeberl2002-egf-mapk-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_egf",
"label": "Initial EGF",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.initial_egf",
"description": "Initial level of EGF. Maps to SBML symbol `x1`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_t_egf_egfr",
"label": "Initial T EGF EGFR",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.initial_t_egf_egfr",
"description": "Initial level of T EGF EGFR. Maps to SBML symbol `EGF_EGFR_act`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_t_erk_pp",
"label": "Initial T ERK PP",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.initial_t_erk_pp",
"description": "Initial level of T ERK PP. Maps to SBML symbol `ERK_PP`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
"label": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gdp",
"description": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GDP. Maps to SBML symbol `x20` and is emitted in native SBML units."
},
{
"name": "egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gtp",
"label": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GTP",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.egf_egfri_2_gap_grb2_adapter_protein_sos_guanine_nucleotide_exchange_factor_ras_gtp",
"description": "EGF Egfri 2 GAP Grb2 adapter protein SOS guanine-nucleotide exchange factor RAS GTP. Maps to SBML symbol `x21` and is emitted in native SBML units."
},
{
"name": "ras_gdp",
"label": "RAS GDP",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.ras_gdp",
"description": "RAS GDP. Maps to SBML symbol `x26` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Schoeberl2002 - EGF MAPK Lab",
"models": [
{
"path": "owned/models/signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model",
"alias": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model_state"
],
"from": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.state"
},
{
"to": [
"visualisation.signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model_summary"
],
"from": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model_species_labels"
],
"from": "signaling_sbml_schoeberl2002_egf_mapk_biomd0000000019_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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