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PetelenzKuehn_osmoadaptation_fps1D1 Lab

About lab

Clean Biosimulant lab for systems signaling model: PetelenzKuehn_osmoadaptation_fps1D1. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagepetelenzkuehn-osmoadaptation-fps1d1-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebistress-responsevisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_t_stress_level",
        "label": "T Stress",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.initial_t_stress_level",
        "description": "T Stress source parameter. Maps to SBML symbol `t_stress` and preserves the bundled default."
      },
      {
        "name": "initial_glucose_e",
        "label": "Initial Glucose E",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.initial_glucose_e",
        "description": "Initial level of Glucose E. Maps to SBML symbol `glucose_e`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_glucose_i",
        "label": "Initial Glucose I",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.initial_glucose_i",
        "description": "Initial level of Glucose I. Maps to SBML symbol `glucose_i`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "glycerol_i",
        "label": "Glycerol I",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.glycerol_i",
        "description": "Glycerol I. Maps to SBML symbol `glycerol_i` and is emitted in native SBML units."
      },
      {
        "name": "intracellular_concentration_input",
        "label": "intracellular concentration input",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.intracellular_concentration_input",
        "description": "intracellular concentration input. Maps to SBML symbol `cin` and is emitted in native SBML units."
      },
      {
        "name": "glucose_i",
        "label": "Glucose I",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.glucose_i",
        "description": "Glucose I. Maps to SBML symbol `glucose_i` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "stress-response"
  ],
  "title": "PetelenzKuehn_osmoadaptation_fps1D1 Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model",
      "alias": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model_state"
      ],
      "from": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model_summary"
      ],
      "from": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model_species_labels"
      ],
      "from": "signaling_sbml_petelenzkuehn_osmoadaptation_fps1d1_biomd0000000607_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: PetelenzKuehn_osmoadaptation_fps1D1. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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