Waugh2006 - Sherratt Mathematical Macrophage Dynamics Diabetic Wound Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_density_state_state",
        "label": "Initial Density State State (source T)",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.initial_density_state_state",
        "description": "Initial value for Density State State (source T). Maps to source symbol `T`. Units: pg_per_mm3. Naming evidence: density-like units identify a concentration or density state.",
        "accepted_units": [
          "pg_per_mm3"
        ]
      },
      {
        "name": "initial_phi_i",
        "label": "Initial Phi I",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.initial_phi_i",
        "description": "Initial value for Phi I. Maps to source symbol `phi_I`. Units: cells_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "cells_per_mm3"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.variable_labels"
      },
      {
        "name": "density_state_state",
        "label": "Density State State (source T)",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.density_state_state",
        "description": "Density State State (source T). Maps to source symbol `T`. Units: pg_per_mm3. Naming evidence: density-like units identify a concentration or density state."
      },
      {
        "name": "phi_i",
        "label": "Phi I",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.phi_i",
        "description": "Phi I. Maps to source symbol `phi_I`. Units: cells_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phi_r",
        "label": "Phi R",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.phi_r",
        "description": "Phi R. Maps to source symbol `phi_R`. Units: cells_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha",
        "label": "Alpha",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.alpha",
        "description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cell_population_k_t",
        "label": "Cell Population K T (source K_T)",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.cell_population_k_t",
        "description": "Cell Population K T (source K_T). Maps to source symbol `K_T`. Units: cells_per_mm3_day. Naming evidence: cell units identify a cell-population state."
      },
      {
        "name": "model_parameters_d1",
        "label": "Model Parameters D1",
        "maps_to": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.model_parameters_d1",
        "description": "Model Parameters D1. Maps to source symbol `d1`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Waugh2006 - Sherratt Mathematical Macrophage Dynamics Diabetic Wound Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model",
      "alias": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model",
      "parameters": {
        "model_path": "data/waugh_sherratt_2006_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model_state"
      ],
      "from": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model_summary"
      ],
      "from": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model_trajectory"
      ],
      "from": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model_variable_labels"
      ],
      "from": "physiology_cellml_waugh_sherratt_2006_waughsherratt2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Waugh, Sherratt, 2006. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}