Bertram2007_IsletCell_Oscillations Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_pancreatic_metabolism_state_1",
        "units": "native SBML value",
        "default": -60,
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.initial_pancreatic_metabolism_state_1",
        "description": "Initial condition for pancreatic metabolism state 1. Maps to bundled SBML symbol `Vm`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_pancreatic_metabolism_state_2",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.initial_pancreatic_metabolism_state_2",
        "description": "Initial condition for pancreatic metabolism state 2. Maps to bundled SBML symbol `n`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 301,
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_bisphosphate",
        "units": "native SBML value",
        "default": 2.16,
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.initial_fructose_bisphosphate",
        "description": "Initial condition for fructose bisphosphate. Maps to bundled SBML symbol `FBP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_mitochondrial_nadh",
        "units": "native SBML value",
        "default": 0.4,
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.initial_mitochondrial_nadh",
        "description": "Initial condition for mitochondrial nadh. Maps to bundled SBML symbol `NADHm`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "pancreatic_metabolism_state_1",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.pancreatic_metabolism_state_1"
      },
      {
        "name": "pancreatic_metabolism_state_2",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.pancreatic_metabolism_state_2"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.glucose_6_phosphate"
      },
      {
        "name": "fructose_bisphosphate",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.fructose_bisphosphate"
      },
      {
        "name": "mitochondrial_nadh",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.mitochondrial_nadh"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.observable_labels"
      }
    ]
  },
  "title": "Bertram2007_IsletCell_Oscillations Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model",
      "alias": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model",
      "parameters": {
        "model_path": "data/BIOMD0000000376.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model_observable_values"
      ],
      "from": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model_run_summary"
      ],
      "from": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model_observable_labels"
      ],
      "from": "metabolism_sbml_bertram2007_isletcell_oscillations_biomd0000000376_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is the model described in the article: Interaction of glycolysis and mitochondrial respiration in metabolic oscillations of pancreatic islets. Bertram R, Satin LS, Pedersen MG, Luciani DS, Sherma.",
  "schema_version": "2.0"
}