BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells Lab

About lab

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells

This Biosimulant lab wraps Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells as a runnable systems biology model with a companion visualization module. This is the segment polarity network model described by von Dassow et al. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: vonDassow2000 - Segment Polarity Network model on 1x4 grid of cells. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on EWG_T_0,1, EWG_T_0,2, EWG_T_0,0, EWG_T_0,3, en_0,2, and EN_0,2, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, EWG_T_0,1 moved from 1.400 to 1.441 across 1.0 simulation windows.

Output Visualizations

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells - run interpretation

Summary table for Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells, reporting the scientific question, observed answer, dominant module, and caveat.

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells - timeseries visualization

Trajectories of EWG_T_0,1, en_0,2, EWG_T_0,0, EWG_T_0,2, EWG_T_0,3, and EN_0,2 across the 1.0 simulation. In this run EWG_T_0,1 climbed from 1.400 to 1.441 — the largest movements among the focused observables.

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 3: EWG_T_0,1 = 0.0415, en_0,2 = 0.0401, EWG_T_0,0 = 0.0299, with 3 more observables below.

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells - timeseries visualization

Trajectories of EWG_T_0,1, en_0,2, EWG_T_0,0, EWG_T_0,2, EWG_T_0,3, and EN_0,2 across the 1.0 simulation. In this run EWG_T_0,1 climbed from 1.400 to 1.441 — the largest movements among the focused observables.

Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells - visualization

Visualization card from the Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:BIOMD0000001065
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Ewg T 0 1systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_1Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol EWG_T_0_1.
Initial Ewg T 0 2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol EWG_T_0_2.
Initial Ewg T 0 0systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_0Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol EWG_T_0_0.
Initial Ewg T 0 3systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_3Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol EWG_T_0_3.
Initial En 0 2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_en_0_2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol en_0_2.
Initial En 0 2 2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_en_0_2_2Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol EN_0_2.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.species_labelsAvailable to the visualization model and downstream workflows.
ewg_t_0_1systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_1Available to the visualization model and downstream workflows.
ewg_t_0_2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_2Available to the visualization model and downstream workflows.
ewg_t_0_0systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_0Available to the visualization model and downstream workflows.
ewg_t_0_3systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_3Available to the visualization model and downstream workflows.
en_0_2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.en_0_2Available to the visualization model and downstream workflows.
en_0_2_2systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.en_0_2_2Available to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

This is the segment polarity network model described by von Dassow et al. It can be used to explore systemsbiology vondassow2000 segment polarity network on dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagevondassow2000-segment-polarity-network-model-on-1x4-grid-of-cell
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ewg_t_0_1",
        "label": "Initial Ewg T 0 1",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EWG_T_0_1`."
      },
      {
        "name": "initial_ewg_t_0_2",
        "label": "Initial Ewg T 0 2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EWG_T_0_2`."
      },
      {
        "name": "initial_ewg_t_0_0",
        "label": "Initial Ewg T 0 0",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_0",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EWG_T_0_0`."
      },
      {
        "name": "initial_ewg_t_0_3",
        "label": "Initial Ewg T 0 3",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_ewg_t_0_3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EWG_T_0_3`."
      },
      {
        "name": "initial_en_0_2",
        "label": "Initial En 0 2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_en_0_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `en_0_2`."
      },
      {
        "name": "initial_en_0_2_2",
        "label": "Initial En 0 2 2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.initial_en_0_2_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EN_0_2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.species_labels"
      },
      {
        "name": "ewg_t_0_1",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_1"
      },
      {
        "name": "ewg_t_0_2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_2"
      },
      {
        "name": "ewg_t_0_0",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_0"
      },
      {
        "name": "ewg_t_0_3",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.ewg_t_0_3"
      },
      {
        "name": "en_0_2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.en_0_2"
      },
      {
        "name": "en_0_2_2",
        "maps_to": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.en_0_2_2"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Vondassow2000 Segment Polarity Network Model On 1x4 Grid Of Cells Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model",
      "alias": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model_state"
      ],
      "from": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model_summary"
      ],
      "from": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model_species_labels"
      ],
      "from": "systemsbiology_sbml_vondassow2000_segment_polarity_network_model_on_biomd0000001065_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is the segment polarity network model described by von Dassow et al. It can be used to explore systemsbiology vondassow2000 segment polarity network on dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.