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Fisher2006 Nfat Activation Lab

About lab

The model reproduces the kinetics of the nuclear factor of activated cells (NFAT) as depicted in Figure 3a of the paper. Model was successfully tested on Jarnac and MathSBML To the extent possible und.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
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Metadata

Packagefisher2006-nfat-activation-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_calcium_in_nucleus",
        "label": "Initial Calcium In Nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_calcium_in_nucleus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Nuc`."
      },
      {
        "name": "initial_calcium_in_cytosol",
        "label": "Initial Calcium In Cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_calcium_in_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_Cyt`."
      },
      {
        "name": "initial_inactive_calcineurin_in_nucleus",
        "label": "Initial Inactive Calcineurin In Nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_inactive_calcineurin_in_nucleus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Inact_C_Nuc`."
      },
      {
        "name": "initial_inactive_calcineurin_in_cytosol",
        "label": "Initial Inactive Calcineurin In Cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_inactive_calcineurin_in_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Inact_C_Cyt`."
      },
      {
        "name": "initial_phosphorylated_nfat_in_cytosol",
        "label": "Initial Phosphorylated Nfat In Cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_phosphorylated_nfat_in_cytosol",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_Pi_Cyt`."
      },
      {
        "name": "initial_nfat_calcineurin_complex_in_nucleus",
        "label": "Initial Nfat Calcineurin Complex In Nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.initial_nfat_calcineurin_complex_in_nucleus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_Act_C_Nuc`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.species_labels"
      },
      {
        "name": "calcium_in_nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.calcium_in_nucleus"
      },
      {
        "name": "calcium_in_cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.calcium_in_cytosol"
      },
      {
        "name": "inactive_calcineurin_in_nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.inactive_calcineurin_in_nucleus"
      },
      {
        "name": "inactive_calcineurin_in_cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.inactive_calcineurin_in_cytosol"
      },
      {
        "name": "phosphorylated_nfat_in_cytosol",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.phosphorylated_nfat_in_cytosol"
      },
      {
        "name": "nfat_calcineurin_complex_in_nucleus",
        "maps_to": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.nfat_calcineurin_complex_in_nucleus"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Fisher2006 Nfat Activation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model",
      "alias": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model_state"
      ],
      "from": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model_summary"
      ],
      "from": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model_species_labels"
      ],
      "from": "systemsbiology_sbml_fisher2006_nfat_activation_biomd0000000123_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the kinetics of the nuclear factor of activated cells (NFAT) as depicted in Figure 3a of the paper. Model was successfully tested on Jarnac and MathSBML To the extent possible und.",
  "schema_version": "2.0"
}

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