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Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
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Metadata
Packagesass2009-approach-to-an-synuclein-based-bst-model-of-parkinson-s
Created2026-05-17
Updated2026-05-17
neurosciencesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_nad",
"label": "Initial Model State Nad",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_nad",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
},
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
},
{
"name": "initial_nadh",
"label": "Initial Nadh",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_nadh",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
},
{
"name": "initial_v_da",
"label": "Initial V Da",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_v_da",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_DA`."
},
{
"name": "initial_l_tyr",
"label": "Initial L Tyr",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_l_tyr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `L_Tyr`."
},
{
"name": "initial_parkin_synphilin_1_ub",
"label": "Initial Parkin Synphilin 1 Ub",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_parkin_synphilin_1_ub",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Parkin_synphilin_1_ub`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.species_labels"
},
{
"name": "nad",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nad"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.atp"
},
{
"name": "nadh",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nadh"
},
{
"name": "v_da",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.v_da"
},
{
"name": "l_tyr",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.l_tyr"
},
{
"name": "parkin_synphilin_1_ub",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.parkin_synphilin_1_ub"
}
]
},
"tags": [
"neuroscience",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sass2009 Approach To An Synuclein Based Bst Model Of Parkinson S Di Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model",
"alias": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model"
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},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
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],
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},
{
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},
{
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],
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}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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