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Sass2009 Approach To An Synuclein Based Bst Model Of Parkinson S Di Lab

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Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

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Metadata

Packagesass2009-approach-to-an-synuclein-based-bst-model-of-parkinson-s
Created2026-05-17
Updated2026-05-17
neurosciencesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_nad",
        "label": "Initial Model State Nad",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_nad",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
      },
      {
        "name": "initial_model_state_atp",
        "label": "Initial Model State ATP",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
      },
      {
        "name": "initial_nadh",
        "label": "Initial Nadh",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_nadh",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
      },
      {
        "name": "initial_v_da",
        "label": "Initial V Da",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_v_da",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_DA`."
      },
      {
        "name": "initial_l_tyr",
        "label": "Initial L Tyr",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_l_tyr",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `L_Tyr`."
      },
      {
        "name": "initial_parkin_synphilin_1_ub",
        "label": "Initial Parkin Synphilin 1 Ub",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_parkin_synphilin_1_ub",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Parkin_synphilin_1_ub`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.species_labels"
      },
      {
        "name": "nad",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nad"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.atp"
      },
      {
        "name": "nadh",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nadh"
      },
      {
        "name": "v_da",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.v_da"
      },
      {
        "name": "l_tyr",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.l_tyr"
      },
      {
        "name": "parkin_synphilin_1_ub",
        "maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.parkin_synphilin_1_ub"
      }
    ]
  },
  "tags": [
    "neuroscience",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Sass2009 Approach To An Synuclein Based Bst Model Of Parkinson S Di Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model",
      "alias": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_state"
      ],
      "from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_summary"
      ],
      "from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_species_labels"
      ],
      "from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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