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Csikasz-Nagy2006 - Mammalian Cell Cycle model Lab

About lab

Single-model lab wrapper for Csikasz-Nagy2006 - Mammalian Cell Cycle model. This model originates from the Cell Cycle Database . It is described in: Analysis of a generic model of eukaryotic cell-cycle regulation.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagecsikasz-nagy2006-mammalian-cell-cycle-model-lab
Created2026-05-15
Updated2026-05-15
cellcyclesbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "apc_c",
        "label": "APC/C",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.apc_c",
        "description": "Controls APC/C in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.apc_c`."
      },
      {
        "name": "cdc14",
        "label": "Cdc14",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdc14",
        "description": "Controls Cdc14 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdc14`."
      },
      {
        "name": "total_cdc20_apc_c_activator",
        "label": "Total Cdc20 APC/C activator",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cdc20_apc_c_activator",
        "description": "Controls Total Cdc20 APC/C activator in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cdc20_apc_c_activator`."
      },
      {
        "name": "phosphorylated_cdc25",
        "label": "Phosphorylated Cdc25",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_cdc25",
        "description": "Controls Phosphorylated Cdc25 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_cdc25`."
      },
      {
        "name": "inactive_cdh1",
        "label": "Inactive Cdh1",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdh1",
        "description": "Controls Inactive Cdh1 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdh1`."
      },
      {
        "name": "total_cyclin_dependent_kinase_inhibitor",
        "label": "Total cyclin-dependent kinase inhibitor",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cyclin_dependent_kinase_inhibitor",
        "description": "Controls Total cyclin-dependent kinase inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cyclin_dependent_kinase_inhibitor`."
      }
    ],
    "outputs": [
      {
        "name": "phosphorylated_apc_c_c",
        "label": "Phosphorylated APC/C/C",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_apc_c_c",
        "description": "Tracks Phosphorylated APC/C/C in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_apc_c_c`."
      },
      {
        "name": "b_type_cyclin_cdk_inhibitor",
        "label": "B-type cyclin CDK inhibitor",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.b_type_cyclin_cdk_inhibitor",
        "description": "Tracks B-type cyclin CDK inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.b_type_cyclin_cdk_inhibitor`."
      },
      {
        "name": "active_cdc20",
        "label": "Active Cdc20",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.active_cdc20",
        "description": "Tracks Active Cdc20 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.active_cdc20`."
      },
      {
        "name": "inactive_cdc20",
        "label": "Inactive Cdc20",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdc20",
        "description": "Tracks Inactive Cdc20 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdc20`."
      },
      {
        "name": "cdh1_apc_c_activator",
        "label": "Cdh1 APC/C activator",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdh1_apc_c_activator",
        "description": "Tracks Cdh1 APC/C activator in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdh1_apc_c_activator`."
      },
      {
        "name": "cyclin_dependent_kinase_inhibitor",
        "label": "Cyclin-dependent kinase inhibitor",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_dependent_kinase_inhibitor",
        "description": "Tracks Cyclin-dependent kinase inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_dependent_kinase_inhibitor`."
      },
      {
        "name": "cyclin_a",
        "label": "Cyclin A",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_a",
        "description": "Tracks Cyclin A in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_a`."
      },
      {
        "name": "cyclin_b",
        "label": "Cyclin B",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_b",
        "description": "Tracks Cyclin B in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_b`."
      },
      {
        "name": "cyclin_e",
        "label": "Cyclin E",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_e",
        "description": "Tracks Cyclin E in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_e`."
      },
      {
        "name": "cell_mass",
        "label": "Cell mass",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cell_mass",
        "description": "Tracks Cell mass in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cell_mass`."
      },
      {
        "name": "p_b",
        "label": "P B",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_b",
        "description": "Tracks P B in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_b`."
      },
      {
        "name": "p_bcki",
        "label": "P BCKI",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_bcki",
        "description": "Tracks P BCKI in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_bcki`."
      },
      {
        "name": "tri_a",
        "label": "Tri A",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_a",
        "description": "Tracks Tri A in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_a`."
      },
      {
        "name": "tri_e",
        "label": "Tri E",
        "maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_e",
        "description": "Tracks Tri E in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_e`."
      }
    ]
  },
  "title": "Csikasz-Nagy2006 - Mammalian Cell Cycle model Lab",
  "models": [
    {
      "path": "owned/models/cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model",
      "alias": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model",
      "provenance": {
        "owned_path": "owned/models/cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_state"
      ],
      "from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_summary"
      ],
      "from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_species_labels"
      ],
      "from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Single-model lab wrapper for Csikasz-Nagy2006 - Mammalian Cell Cycle model. This model originates from the Cell Cycle Database . It is described in: Analysis of a generic model of eukaryotic cell-cycle regulation.",
  "schema_version": "2.0"
}

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