About lab
This is a mathematical model comprised of non-linear ordinary differential equations describing the dynamic relationship between hypoxia-inducible factor-1 alpha (HIF-1a) mRNA, HIF-1a protein, and int. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagecoulibaly2019-interleukin-15-signaling-in-hif-1a-regulation-in-n
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_unresolved_signaling_observable_1",
"label": "Initial Unresolved Signaling Observable 1",
"units": "native source value",
"default": 1,
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.initial_unresolved_signaling_observable_1",
"description": "Initial Unresolved Signaling Observable 1. Sets the initial value of bundled SBML species `y1_IL_15`."
},
{
"name": "initial_unresolved_signaling_observable_2",
"label": "Initial Unresolved Signaling Observable 2",
"units": "native source value",
"default": 0.05,
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.initial_unresolved_signaling_observable_2",
"description": "Initial Unresolved Signaling Observable 2. Sets the initial value of bundled SBML species `y4_HIF_1a`."
},
{
"name": "initial_unresolved_signaling_observable_3",
"label": "Initial Unresolved Signaling Observable 3",
"units": "native source value",
"default": 1,
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.initial_unresolved_signaling_observable_3",
"description": "Initial Unresolved Signaling Observable 3. Sets the initial value of bundled SBML species `y5_HIF_1b`."
},
{
"name": "initial_unresolved_signaling_observable_4",
"label": "Initial Unresolved Signaling Observable 4",
"units": "native source value",
"default": 0.05,
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.initial_unresolved_signaling_observable_4",
"description": "Initial Unresolved Signaling Observable 4. Sets the initial value of bundled SBML species `y6_HIF_1_Complex`."
},
{
"name": "initial_unresolved_signaling_observable_5",
"label": "Initial Unresolved Signaling Observable 5",
"units": "native source value",
"default": 1,
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.initial_unresolved_signaling_observable_5",
"description": "Initial Unresolved Signaling Observable 5. Sets the initial value of bundled SBML species `y7_NF_KB`."
}
],
"outputs": [
{
"name": "unresolved_signaling_observable_1",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.unresolved_signaling_observable_1"
},
{
"name": "unresolved_signaling_observable_2",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.unresolved_signaling_observable_2"
},
{
"name": "unresolved_signaling_observable_3",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.unresolved_signaling_observable_3"
},
{
"name": "unresolved_signaling_observable_4",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.unresolved_signaling_observable_4"
},
{
"name": "unresolved_signaling_observable_5",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.unresolved_signaling_observable_5"
},
{
"name": "state",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.species_labels"
}
]
},
"title": "Coulibaly2019 - Interleukin-15 Signaling in HIF-1a Regulation in Natural Killer Cells Lab",
"models": [
{
"path": "owned/models/immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model",
"alias": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model",
"provenance": {
"owned_path": "owned/models/immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model_state"
],
"from": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.state"
},
{
"to": [
"visualisation.immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model_summary"
],
"from": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model_species_labels"
],
"from": "immunology_sbml_coulibaly2019_interleukin_15_signaling_in_hif_1a_biomd0000000867_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "This is a mathematical model comprised of non-linear ordinary differential equations describing the dynamic relationship between hypoxia-inducible factor-1 alpha (HIF-1a) mRNA, HIF-1a protein, and int. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
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