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Rattananakul2003 - Rattanakul Mathematical Bone Formation Resorption Mediated Lab

About lab

Source-faithful physiology lab for Rattananakul, Lenbury, Krishnamara, Wollkind, 2003. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagerattananakul2003-rattanakul-mathematical-bone-formation-resorpti
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_concentration_of_parathyroid_hormone",
        "label": "Initial Concentration Of Parathyroid Hormone",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.initial_concentration_of_parathyroid_hormone",
        "description": "Initial value for Concentration Of Parathyroid Hormone. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `concentration of parathyroid hormone`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_number_of_osteoblastic_cells",
        "label": "Initial Number Of Osteoblastic Cells",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.initial_number_of_osteoblastic_cells",
        "description": "Initial value for Number Of Osteoblastic Cells. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source metadata names `z` as `number of osteoblastic cells`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.variable_labels"
      },
      {
        "name": "concentration_of_parathyroid_hormone",
        "label": "Concentration Of Parathyroid Hormone",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.concentration_of_parathyroid_hormone",
        "description": "Concentration Of Parathyroid Hormone. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `concentration of parathyroid hormone`."
      },
      {
        "name": "number_of_osteoblastic_cells",
        "label": "Number Of Osteoblastic Cells",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.number_of_osteoblastic_cells",
        "description": "Number Of Osteoblastic Cells. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source metadata names `z` as `number of osteoblastic cells`."
      },
      {
        "name": "number_of_osteoclastic_cells",
        "label": "Number Of Osteoclastic Cells",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.number_of_osteoclastic_cells",
        "description": "Number Of Osteoclastic Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `number of osteoclastic cells`."
      },
      {
        "name": "delta",
        "label": "Delta",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.delta",
        "description": "Delta. Maps to source symbol `delta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "epsilon",
        "label": "Epsilon",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.epsilon",
        "description": "Epsilon. Maps to source symbol `epsilon`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameters_a1",
        "label": "Model Parameters A1",
        "maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.model_parameters_a1",
        "description": "Model Parameters A1. Maps to source symbol `a1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Rattananakul2003 - Rattanakul Mathematical Bone Formation Resorption Mediated Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model",
      "alias": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model",
      "parameters": {
        "model_path": "data/rattananakul_lenbury_krishnamara_wollkind_2003_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_state"
      ],
      "from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_summary"
      ],
      "from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_trajectory"
      ],
      "from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_variable_labels"
      ],
      "from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Rattananakul, Lenbury, Krishnamara, Wollkind, 2003. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.",
  "schema_version": "2.0"
}

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