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Messiha2013 - Pentose phosphate pathway model Lab

About lab

Clean Biosimulant lab for systems signaling model: Messiha2013 - Pentose phosphate pathway model. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemessiha2013-pentose-phosphate-pathway-model-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_f6p",
        "label": "Initial F6P",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_f6p",
        "description": "Initial level of F6P. Maps to SBML symbol `F6P`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_g6p",
        "label": "Initial G6P",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_g6p",
        "description": "Initial level of G6P. Maps to SBML symbol `G6P`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_gap_state",
        "label": "Initial source-defined GAP state",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_source_defined_gap_state",
        "description": "Initial level of source-defined GAP state. Maps to SBML symbol `GAP`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "e4p",
        "label": "E4P",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.e4p",
        "description": "E4P. Maps to SBML symbol `E4P` and is emitted in native SBML units."
      },
      {
        "name": "g6l",
        "label": "G6L",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.g6l",
        "description": "G6L. Maps to SBML symbol `G6L` and is emitted in native SBML units."
      },
      {
        "name": "nadph",
        "label": "NADPH",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.nadph",
        "description": "NADPH. Maps to SBML symbol `NADPH` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "cellular-signaling"
  ],
  "title": "Messiha2013 - Pentose phosphate pathway model Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model",
      "alias": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_state"
      ],
      "from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_summary"
      ],
      "from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_species_labels"
      ],
      "from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Messiha2013 - Pentose phosphate pathway model. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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