About lab
Clean Biosimulant lab for systems signaling model: Messiha2013 - Pentose phosphate pathway model. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemessiha2013-pentose-phosphate-pathway-model-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_f6p",
"label": "Initial F6P",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_f6p",
"description": "Initial level of F6P. Maps to SBML symbol `F6P`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_g6p",
"label": "Initial G6P",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_g6p",
"description": "Initial level of G6P. Maps to SBML symbol `G6P`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_gap_state",
"label": "Initial source-defined GAP state",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.initial_source_defined_gap_state",
"description": "Initial level of source-defined GAP state. Maps to SBML symbol `GAP`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "e4p",
"label": "E4P",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.e4p",
"description": "E4P. Maps to SBML symbol `E4P` and is emitted in native SBML units."
},
{
"name": "g6l",
"label": "G6L",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.g6l",
"description": "G6L. Maps to SBML symbol `G6L` and is emitted in native SBML units."
},
{
"name": "nadph",
"label": "NADPH",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.nadph",
"description": "NADPH. Maps to SBML symbol `NADPH` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Messiha2013 - Pentose phosphate pathway model Lab",
"models": [
{
"path": "owned/models/signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model",
"alias": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_state"
],
"from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.state"
},
{
"to": [
"visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_summary"
],
"from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model_species_labels"
],
"from": "signaling_sbml_messiha2013_pentose_phosphate_pathway_model_biomd0000000502_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Messiha2013 - Pentose phosphate pathway model. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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